BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC3ZG02RM1.SCF screened BAC_end
(906 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1575 1461 0.0
>3x_Contig1575
Length = 11952
Score = 1461 bits (737), Expect = 0.0
Identities = 786/797 (98%), Gaps = 4/797 (0%)
Strand = Plus / Minus
Query: 48 tagctgtcctaccgtaaagtttgaaactggttttgccaacatagaaaacaatccaggccg 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5962 tagctgtcctaccgtaaagtttgaaactggttttgccaacatagaaaacaatccaggccg 5903
Query: 108 gttctcagtcccacgcatttcatagtacgcgtcagtataggtaaaatccaaaaaaaaaaa 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5902 gttctcagtcccacgcatttcatagtacgcgtcagtataggtaaaatccaaaaaaaaaaa 5843
Query: 168 aagttgaagatttcagaatattagcatagaggccaaaatccaacaaaaattatactctat 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5842 aagttgaagatttcagaatattagcatagaggccaaaatccaacaaaaattatactctat 5783
Query: 228 actttgcgtaggcatattttgccatactgaaaaagttccattttttttttttttaatgtt 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5782 actttgcgtaggcatattttgccatactgaaaaagttccattttttttttttttaatgtt 5723
Query: 288 ttaccctaaccaactgattcttttcaaagaaaaaatcatattcaagtcccacagaaaaga 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5722 ttaccctaaccaactgattcttttcaaagaaaaaatcatattcaagtcccacagaaaaga 5663
Query: 348 gggtagggtaaatctgccatatccttcaatttagatggaattggcggctaaaagacgaat 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5662 gggtagggtaaatctgccatatccttcaatttagatggaattggcggctaaaagacgaat 5603
Query: 408 tccatgaaatatagagaaacagcaagaaataatgccatctaagctatattgtaaacctcg 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5602 tccatgaaatatagagaaacagcaagaaataatgccatctaagctatattgtaaacctcg 5543
Query: 468 tagataagtttgatagaaacgatcaatcagattggaaaggaggcaaagttagagggtttc 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5542 tagataagtttgatagaaacgatcaatcagattggaaaggaggcaaagttagagggtttc 5483
Query: 528 ttagggaaggcggtctcttaattcctgtcacgtggcaataaattccctttcgattcttca 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5482 ttagggaaggcggtctcttaattcctgtcacgtggcaataaattccctttcgattcttca 5423
Query: 588 tacaactgtgagttggtactctcttttctgaagtcctgcttcaaaagatactggtagttt 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5422 tacaactgtgagttggtactctcttttctgaagtcctgcttcaaaagatactggtagttt 5363
Query: 648 gttgacacatacttatctgagttctaactagctagtttgggaaagttttggtttggtttg 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5362 gttgacacatacttatctgagttctaactagctagtttgggaaagttttggtttggtttg 5303
Query: 708 accagcgacaatacttaagaatggtcagtgtcttggcgacttcagtttacacaatttacc 767
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 5302 accagcgacaatacttagaaatggtcagtgtcttggcgacttcagtttacacaatttacc 5243
Query: 768 cttctggcttttatatgtatcggtttaaatattcctgattcctattttaattggaacttc 827
|||||| || |||||||||||| |||| ||||| |||||||||| ||||||||| |||||
Sbjct: 5242 cttctgtctcttatatgtatcgctttatatatt-ctgattccta-tttaattgg-acttc 5186
Query: 828 cggtgcctttcatattt 844
| || ||||||||||||
Sbjct: 5185 ctgt-cctttcatattt 5170
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 22,999
Number of Sequences: 1807
Number of extensions: 22999
Number of successful extensions: 527
Number of sequences better than 1.0e-20: 1
length of query: 906
length of database: 10,358,551
effective HSP length: 16
effective length of query: 890
effective length of database: 10,329,639
effective search space: 9193378710
effective search space used: 9193378710
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)