BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC3ZG04FM1.SCF screened BAC_end
(921 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1668 1211 0.0
>3x_Contig1668
Length = 13429
Score = 1211 bits (611), Expect = 0.0
Identities = 667/675 (98%), Gaps = 8/675 (1%)
Strand = Plus / Plus
Query: 88 tgctagcgagatttcgagctcttccaaatcgtaaacaacgtaagcactggttaggaaggc 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8012 tgctagcgagatttcgagctcttccaaatcgtaaacaacgtaagcactggttaggaaggc 8071
Query: 148 atcacctaaagtaatttcgttatcagattgagggagtattcccaagacacattgggaaga 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8072 atcacctaaagtaatttcgttatcagattgagggagtattcccaagacacattgggaaga 8131
Query: 208 actgctcgttgtaacaatgtaatcacttaagggggatatgatatggaagccaccaaagtc 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8132 actgctcgttgtaacaatgtaatcacttaagggggatatgatatggaagccaccaaagtc 8191
Query: 268 gaagacaagatcataatcactgccagaatcacaatccacaaaatagtatcctgaactgga 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8192 gaagacaagatcataatcactgccagaatcacaatccacaaaatagtatcctgaactgga 8251
Query: 328 agagtacgtagcactaacagaacttgcaatggcagcagctaaactacttgggaagtaaca 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8252 agagtacgtagcactaacagaacttgcaatggcagcagctaaactacttgggaagtaaca 8311
Query: 388 gaatgtggcaccagtgtctagcaatgcagggtacttagtctgtgtcacagtctcgttacc 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8312 gaatgtggcaccagtgtctagcaatgcagggtacttagtctgtgtcacagtctcgttacc 8371
Query: 448 ataactgctcgtcacaccgataccttgtagagtgatcgataatctaatctgttcagtgta 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8372 ataactgctcgtcacaccgataccttgtagagtgatcgataatctaatctgttcagtgta 8431
Query: 508 gcctatgcttctgagagcgttgaccattggaacggtgtacaacgtacctgtatatttgct 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8432 gcctatgcttctgagagcgttgaccattggaacggtgtacaacgtacctgtatatttgct 8491
Query: 568 gtgatcgacggcaccgaataagatagaaccagaatccgcatctaagtcattcaagaaaac 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8492 gtgatcgacggcaccgaataagatagaaccagaatccgcatctaagtcattcaagaaaac 8551
Query: 628 agaatatgcattcttttcgattgacgccgtttctttgcaacacgatatgggaagttattc 687
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||
Sbjct: 8552 agaatatgcattcttttcga-tgacgccgtttctttgcaacacgata-gggaagtta-tc 8608
Query: 688 gtattgatagccggttgtaggttgcttaacttgaccggaataagtgggattcagaacctg 747
|||||||||| |||||||||| |||||||| |||||||||||||| |||||||||||||
Sbjct: 8609 gtattgatag-cggttgtagg-tgcttaac-tgaccggaataagt-ggattcagaacct- 8663
Query: 748 gtcaatccaatacct 762
|||||||||||||||
Sbjct: 8664 gtcaatccaatacct 8678
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5219
Number of Sequences: 1807
Number of extensions: 5219
Number of successful extensions: 33
Number of sequences better than 1.0e-20: 1
length of query: 921
length of database: 10,358,551
effective HSP length: 16
effective length of query: 905
effective length of database: 10,329,639
effective search space: 9348323295
effective search space used: 9348323295
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)