BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC3ZG05FM1.SCF screened BAC_end
(930 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1696 1275 0.0
>3x_Contig1696
Length = 16725
Score = 1275 bits (643), Expect = 0.0
Identities = 692/702 (98%), Gaps = 5/702 (0%)
Strand = Plus / Minus
Query: 86 acaagtgggatcagaaagataaacttcttttggaaagacaacgattactcaatgatttag 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7856 acaagtgggatcagaaagataaacttcttttggaaagacaacgattactcaatgatttag 7797
Query: 146 aagcttcactttacgctgctcgagaattggttgaagatgcgaaagaattagagaccccac 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7796 aagcttcactttacgctgctcgagaattggttgaagatgcgaaagaattagagaccccac 7737
Query: 206 caacatcatacattcaacaattagagaatatgataactcaatacttagagtttgttgatg 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7736 caacatcatacattcaacaattagagaatatgataactcaatacttagagtttgttgatg 7677
Query: 266 atccttcttcgctcaggacaaaaaatatcaaaaccatgaagagtaatctagccgagttac 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7676 atccttcttcgctcaggacaaaaaatatcaaaaccatgaagagtaatctagccgagttac 7617
Query: 326 agcaaagattagagatttacatggatcgtgataacaaacaactagacgtggaaggattta 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7616 agcaaagattagagatttacatggatcgtgataacaaacaactagacgtggaaggattta 7557
Query: 386 gagcattatttgacaaaggtgaaaagtatctggaattgttgtcaaaaattcaacaaaaaa 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7556 gagcattatttgacaaaggtgaaaagtatctggaattgttgtcaaaaattcaacaaaaaa 7497
Query: 446 gtctcagtgaactttcacctttgaacaaaaattttgagagcttgggtcttaatgttagtg 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7496 gtctcagtgaactttcacctttgaacaaaaattttgagagcttgggtcttaatgttagtg 7437
Query: 506 aagagtatacgaaagtgaagcctccaaagtcgaagaccgtgccatttgaaattttaaatg 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7436 aagagtatacgaaagtgaagcctccaaagtcgaagaccgtgccatttgaaattttaaatg 7377
Query: 566 ggacaatagatctcttgcattctcaattaaagcacatcanggatattattgaagataata 625
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 7376 ggacaatagatctcttgcattctcaattaaagcacatcagggatattattgaagataata 7317
Query: 626 attccacgtatgctattgaggatttatttgaacagaaacttgaggtcgattcgttatatg 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7316 attccacgtatgctattgaggatttatttgaacagaaacttgaggtcgattcgttatatg 7257
Query: 686 aaaagattgtactttttggtgaaaaaaataagagcagagcataagtaccgttttgagttg 745
||||||||| || |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 7256 aaaagattgaac-ttttggtgaaaaaaataagagcagagcataagtaccgtttgaagttg 7198
Query: 746 ctttcaattcgttttatgattagaagattgacttgctcaaaa 787
| |||||| || ||||||| |||||||||||| |||||||||
Sbjct: 7197 c-ttcaatccg-tttatga-tagaagattgac-tgctcaaaa 7160
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8281
Number of Sequences: 1807
Number of extensions: 8281
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 1
length of query: 930
length of database: 10,358,551
effective HSP length: 16
effective length of query: 914
effective length of database: 10,329,639
effective search space: 9441290046
effective search space used: 9441290046
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)