BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC3ZG05RM1.SCF screened BAC_end
(892 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1113 844 0.0
3x_Contig1371 412 e-115
>3x_Contig1113
Length = 4340
Score = 844 bits (426), Expect = 0.0
Identities = 471/482 (97%), Gaps = 3/482 (0%)
Strand = Plus / Plus
Query: 387 tttctttactgaatgcgatgttatttgtaatgccaagtcgttttatatgactgcattttt 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23 tttctttactgaatgcgatgttatttgtaatgccaagtcgttttatatgactgcattttt 82
Query: 447 g-gtaaactaattcccaccgtcagtctaactccagtaaataaacactttctcacttatag 505
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83 gcgtaaactaattcccaccgtcagtctaactccagtaaataaacactttctcacttatag 142
Query: 506 atactttctcatagatcaacttcctatactattaggctgtaatgtcgccataaacgccta 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143 atactttctcatagatcaacttcctatactattaggctgtaatgtcgccataaacgccta 202
Query: 566 agacgaatgttgctcatacggctgttagatatcccacctatatcacgtgatagacatgct 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 agacgaatgttgctcatacggctgttagatatcccacctatatcacgtgatagacatgct 262
Query: 626 ttatttagttggtgttgaaaatcctttcgaagataggaaaaaaaattcaatcaacattta 685
|||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |
Sbjct: 263 ttatttagttggtgttgaaaatccttcgaaagatagaaaaaaaaattcaatcaacattaa 322
Query: 686 aagcgtaataacaggacaaacatattatgtatcaagacgaccagagcgagtaaaccaagt 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 aagcgtaataacaggacaaacatattatgtatcaagacgaccagagcgagtaaaccaagt 382
Query: 746 ctcttataccagaatttaacgccaagttttggtgaaatacaataatcatgacgaaaggtt 805
|||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 383 ctcttaaaccagaatttaacgccaag-tttggtgaaatacaataatcatgacgaaaggtt 441
Query: 806 tggtgaggataagactagctagattcgg-aggaaacataccccagtttacaacataattg 864
|||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |||
Sbjct: 442 tggtgaggataagactagctagattcggaaggaaacataccccagtatacaacatagttg 501
Query: 865 tt 866
||
Sbjct: 502 tt 503
>3x_Contig1371
Length = 6052
Score = 412 bits (208), Expect = e-115
Identities = 208/208 (100%)
Strand = Plus / Plus
Query: 49 gacgcttgttcaggacccatattgcacaatttgttcgcttgtcagttttcaatcccaagt 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5845 gacgcttgttcaggacccatattgcacaatttgttcgcttgtcagttttcaatcccaagt 5904
Query: 109 taaactcagtaattctcttttctgaggtgttgttgattataactcgtctctacttgttag 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5905 taaactcagtaattctcttttctgaggtgttgttgattataactcgtctctacttgttag 5964
Query: 169 atgagatgagcgatgagatgagctagattgaaaattttatacagcttgtgaaaaatttct 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5965 atgagatgagcgatgagatgagctagattgaaaattttatacagcttgtgaaaaatttct 6024
Query: 229 ttttaagcccttagtgatgaagcagcaa 256
||||||||||||||||||||||||||||
Sbjct: 6025 ttttaagcccttagtgatgaagcagcaa 6052
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7958
Number of Sequences: 1807
Number of extensions: 7958
Number of successful extensions: 69
Number of sequences better than 1.0e-20: 2
length of query: 892
length of database: 10,358,551
effective HSP length: 16
effective length of query: 876
effective length of database: 10,329,639
effective search space: 9048763764
effective search space used: 9048763764
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)