BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC3ZG06RM1.SCF screened BAC_end
         (891 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig471                                                         1384   0.0  

>3x_Contig471 
          Length = 2964

 Score = 1384 bits (698), Expect = 0.0
 Identities = 801/829 (96%), Gaps = 5/829 (0%)
 Strand = Plus / Minus

                                                                        
Query: 51   cgttggtgaaagtcgattcaagatcattttcaggttcttctgataaattagtcttgccta 110
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2458 cgttggtgaaagtcgattcaagatcattttcaggttcttctgataaattagtcttgccta 2399

                                                                        
Query: 111  agcgaattttcttcggcagcaggagctgctgattcactgtttgctgcattcttcttcttc 170
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2398 agcgaattttcttcggcagcaggagctgctgattcactgtttgctgcattcttcttcttc 2339

                                                                        
Query: 171  ttcttcttcttgtttttattcttgttgctagacttagaagcaggctcgttcacgtcttga 230
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2338 ttcttcttcttgtttttattcttgttgctagacttagaagcaggctcgttcacgtcttga 2279

                                                                        
Query: 231  gtatcaccttcatgctcggcttcatctttatctttagcctcgtctttggcttcagctgag 290
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2278 gtatcaccttcatgctcggcttcatctttatctttagcctcgtctttggcttcagctgag 2219

                                                                        
Query: 291  gcttcagctgaggcttcaggtgtctcttcagcctcttcagccttagtaggttcattttca 350
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2218 gcttcagctgaggcttcaggtgtctcttcagcctcttcagccttagtaggttcattttca 2159

                                                                        
Query: 351  gctacatcttcagaattttcttcgatgacaggttcactttcttcaatttcttccttgaca 410
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2158 gctacatcttcagaattttcttcgatgacaggttcactttcttcaatttcttccttgaca 2099

                                                                        
Query: 411  ctttcttcaattacttctttgacaaccggttctgtttcctgagctggctcttcttcctga 470
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2098 ctttcttcaattacttctttgacaaccggttctgtttcctgagctggctcttcttcctga 2039

                                                                        
Query: 471  gctggctcttcttcctgagctggctcttcttcctgagctggctcttcttcctgagctggc 530
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2038 gctggctcttcttcctgagctggctcttcttcctgagctggctcttcttcctgagctggc 1979

                                                                        
Query: 531  tcttcttcttgagctggtttatcctcttnctcggccgaaccctcagaactaacctgctgt 590
            |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 1978 tcttcttcttgagctggtttatcctcttcctcggccgaaccctcagaactaacctgctgt 1919

                                                                        
Query: 591  tcgttcacaggactggtttcaacagcgggatggttcgaatcacccttgtcctccacagga 650
             ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 1918 ccgttcacaggactggtttcaacagcggaatggttcgaatcacccttgtcctccacagga 1859

                                                                        
Query: 651  tccttagcgatgctctcaaattcttttatc-aatcggcaacacccattgtcaaatcttct 709
            ||||||||||||||||||||||  |||||| |||||||||||||||||||||||||||||
Sbjct: 1858 tccttagcgatgctctcaaatttctttatcaaatcggcaacacccattgtcaaatcttct 1799

                                                                        
Query: 710  attaatgcttgttcgcactgttttgaattcccgtttgaagtaacgactacagacaagcgg 769
            |||||||||  |||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 1798 attaatgctgtttcgcactgttttgaatt-ccggttgaagtaacgactacagacaagcgg 1740

                                                                        
Query: 770  atcgacttgagcaagcctgtaatggaccttctctttcgctttttttgttgacagttttgt 829
            |||||||   ||| |||||||||| || |||||||  ||| || | ||||||||||||||
Sbjct: 1739 atcgactgaggcaggcctgtaatgtacgttctcttcggctcttctcgttgacagttttgt 1680

                                                             
Query: 830  tggaaaattttattgttctggaatcaaaagaaacattgttaaaaagtaa 878
            | |||||||||  ||| |||| ||||||||| |||||| ||||||||||
Sbjct: 1679 t-gaaaatttttatgtactgg-atcaaaagagacattg-taaaaagtaa 1634


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,070
Number of Sequences: 1807
Number of extensions: 10070
Number of successful extensions: 569
Number of sequences better than 1.0e-20: 1
length of query: 891
length of database: 10,358,551
effective HSP length: 16
effective length of query: 875
effective length of database: 10,329,639
effective search space: 9038434125
effective search space used: 9038434125
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)