BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC3ZG07FM1.SCF screened BAC_end
         (914 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1770                                                         892   0.0  

>3x_Contig1770 
          Length = 29267

 Score =  892 bits (450), Expect = 0.0
 Identities = 509/522 (97%), Gaps = 5/522 (0%)
 Strand = Plus / Minus

                                                                         
Query: 95    tcagaatgctgctatggcaactggctgtgagtccaattcacctttattaactgtctttta 154
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14695 tcagaatgctgctatggcaactggctgtgagtccaattcacctttattaactgtctttta 14636

                                                                         
Query: 155   ctgtgatgggttattaaatagatactgtttaagctcaagaatttgtaaacatcaggaaaa 214
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14635 ctgtgatgggttattaaatagatactgtttaagctcaagaatttgtaaacatcaggaaaa 14576

                                                                         
Query: 215   caagtaactaattttgtaacataaagtttaagaatgaaaacaggaacgtgaatcgccgta 274
             ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14575 caagtaactaagtttgaaacataaagtttaagaatgaaaacaggaacgtgaatcgccgta 14516

                                                                         
Query: 275   gagcctcgatcaacggtttattaacacctatctgaacatctaaaacacggcgttggaaaa 334
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14515 gagcctcgatcaacggtttattaacacctatctgaacatctaaaacacggcgttggaaaa 14456

                                                                         
Query: 335   ccaaccaacatttataagaatatggctacaaagttagaggcgtttataaacgatctcaga 394
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14455 ccaaccaacatttataagaatatggctacaaagttagaggcgtttataaacgatctcaga 14396

                                                                         
Query: 395   ctacaatgtgaaactaacgatacaacgaagtatgtcagtatcgttcttttctgtgaaaaa 454
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14395 ctacaatgtgaaactaacgatacaacgaagtatgtcagtatcgttcttttctgtgaaaaa 14336

                                                                         
Query: 455   -aaaccactttgaagctgttcttccagtacattgatggcattgatacgaattcagagccc 513
              |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14335 gaaaccactttgaagctgttcttccagtacattgatggcattgatacgaattcagagccc 14276

                                                                         
Query: 514   aagctttgctg-gctgtcgcctacactcttccccgttggatactattcccaggaaaatac 572
             |||| |||||| ||||||||||||||||| |||||||||||||||| || |||||| |||
Sbjct: 14275 aagc-ttgctgtgctgtcgcctacactctcccccgttggatactataccaaggaaattac 14217

                                                       
Query: 573   cacttgaaaatggatggcaagtaaatacttaatttcacatgc 614
             ||| |||| ||||||||||||| |||||||||| ||||||||
Sbjct: 14216 cac-tgaagatggatggcaagt-aatacttaatatcacatgc 14177


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,506
Number of Sequences: 1807
Number of extensions: 12506
Number of successful extensions: 93
Number of sequences better than 1.0e-20: 1
length of query: 914
length of database: 10,358,551
effective HSP length: 16
effective length of query: 898
effective length of database: 10,329,639
effective search space: 9276015822
effective search space used: 9276015822
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)