BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC3ZG07RM1.SCF screened BAC_end
(921 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1607 936 0.0
>3x_Contig1607
Length = 10159
Score = 936 bits (472), Expect = 0.0
Identities = 523/535 (97%), Gaps = 4/535 (0%)
Strand = Plus / Minus
Query: 48 taatcaaacgctgtgaagaacttgatgaaccaattcctcatgatgagcacttatccgata 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5010 taatcaaacgctgtgaagaacttgatgaaccaattcctcatgatgagcacttatccgata 4951
Query: 108 tgaaccctcaattcaaatatatgtactaatacccccccccccaccttcttagtcagagtc 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4950 tgaaccctcaattcaaatatatgtactaatacccccccccccaccttcttagtcagagtc 4891
Query: 168 aaaaattaaaacaaagaacttcgaacggtttccttatctgaacttacaacattgtatttt 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4890 aaaaattaaaacaaagaacttcgaacggtttccttatctgaacttacaacattgtatttt 4831
Query: 228 attagtattaggtttgtattaatgtataaattaaagattacacgactttttattgtggcc 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4830 attagtattaggtttgtattaatgtataaattaaagattacacgactttttattgtggcc 4771
Query: 288 ttttttctagtagtacatatagtctcttctattatcaaggcattcataaatattgaatgt 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4770 ttttttctagtagtacatatagtctcttctattatcaaggcattcataaatattgaatgt 4711
Query: 348 tgtatcatgagaattatttgccgttaacatcatccggtgtggatggaatgccatagtgga 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4710 tgtatcatgagaattatttgccgttaacatcatccggtgtggatggaatgccatagtgga 4651
Query: 408 aatgaaaggcgatgatcttgcaccagtagtcatcccactaattggtcctgaatgagagga 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4650 aatgaaaggcgatgatcttgcaccagtagtcatcccactaattggtcctgaatgagagga 4591
Query: 468 accgtgattcttaaaggtgcgtaacanatcttcagatgttggccataatttgatttcttt 527
|||||||||||||||||||||||||| |||| ||||||||| ||||||||||||||| ||
Sbjct: 4590 accgtgattcttaaaggtgcgtaacaaatctccagatgttgtccataatttgatttc-tt 4532
Query: 528 tcgtccaag-tggtattattgaagcctggtcgtgtaccttgc-tacttgtcatgg 580
|||||| || || ||| |||||||| || ||||||| ||||| ||||||||||||
Sbjct: 4531 tcgtcccagttgctataattgaagcgtgttcgtgta-cttgcatacttgtcatgg 4478
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7895
Number of Sequences: 1807
Number of extensions: 7895
Number of successful extensions: 51
Number of sequences better than 1.0e-20: 1
length of query: 921
length of database: 10,358,551
effective HSP length: 16
effective length of query: 905
effective length of database: 10,329,639
effective search space: 9348323295
effective search space used: 9348323295
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)