BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC3ZG08FM1.SCF screened BAC_end
(923 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig332 391 e-108
3x_Contig798 325 9e-89
>3x_Contig332
Length = 1517
Score = 391 bits (197), Expect = e-108
Identities = 217/221 (98%), Gaps = 2/221 (0%)
Strand = Plus / Minus
Query: 501 ccgctatgccaagacatatcataccaaagtcagcgtttggacaatcatttgcatgatcag 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1514 ccgctatgccaagacatatcataccaaagtcagcgtttggacaatcatttgcatgatcag 1455
Query: 561 agtctgaagtcaataatcgtattagatcccattaccatcggtgaacgtggctcaattgac 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1454 agtctgaagtcaataatcgtattagatcccattaccatcggtgaacgtggctcaattgac 1395
Query: 621 gtaaaacttccgattttgaacccgcatattattccgattattgagccatatcagtaccat 680
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1394 gtaaaacttccgattttgaacccgcatattattccgattattgagccatatcagtaccat 1335
Query: 681 gagaagggagctttttaagaaatgggctgggcgatccatct 721
||||||| ||| ||||||||||| |||| ||||||||||||
Sbjct: 1334 gagaaggaagc-ttttaagaaattggct-ggcgatccatct 1296
>3x_Contig798
Length = 3073
Score = 325 bits (164), Expect = 9e-89
Identities = 176/180 (97%)
Strand = Plus / Plus
Query: 85 taaactggcagttttctctgatgacttgactcattgataaaactagaataaatgatggtt 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2894 taaactggcagttttctctgatgacttgactcattgataaaactagaataaatgatggtt 2953
Query: 145 ttatacactttccatatttgcagataaatggtttgatctcatcatataacgtccaaaggc 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2954 ttatacactttccatatttgcagataaatggtttgatctcatcatataacgtccaaaggc 3013
Query: 205 acattttgtgggtctttgctatgatcaaaacatggattaggtgtttgaccacagaggtca 264
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3014 acattttgtgggctagtgctatgatcaaaacatggattaggtgtttgaccacagaggtca 3073
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6521
Number of Sequences: 1807
Number of extensions: 6521
Number of successful extensions: 44
Number of sequences better than 1.0e-20: 2
length of query: 923
length of database: 10,358,551
effective HSP length: 16
effective length of query: 907
effective length of database: 10,329,639
effective search space: 9368982573
effective search space used: 9368982573
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)