BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC3ZG08RM1.SCF screened BAC_end
(948 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1742 872 0.0
>3x_Contig1742
Length = 17167
Score = 872 bits (440), Expect = 0.0
Identities = 504/516 (97%), Gaps = 7/516 (1%)
Strand = Plus / Minus
Query: 49 tctcgtcctagcgttttaaattcctcca-tgatgttgtctcgtttagaagctgtctcaac 107
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 10964 tctcgtcctagcgttttaaattcctccaatgatgttgtctcgtttagaagctgtctcaac 10905
Query: 108 aatgcaatcttatctacgccaggtagatttaacttatcaacaatgctttgaacgtattga 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10904 aatgcaatcttatctacgccaggtagatttaacttatcaacaatgctttgaacgtattga 10845
Query: 168 acagcatgtttctttgaacaatatttgcttcttgaattggcatcacactctgtatagcat 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10844 acagcatgtttctttgaacaatatttgcttcttgaattggcatcacactctgtatagcat 10785
Query: 228 tcagggagcctgcatttcctcttccaaagagttttcggtagtttgccgccatttatcaat 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10784 tcagggagcctgcatttcctcttccaaagagttttcggtagtttgccgccatttatcaat 10725
Query: 288 gccggtcctgtaattccagcactacaatacgaacagtagaatgaaaaaacgagatctcta 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10724 gccggtcctgtaattccagcactacaatacgaacagtagaatgaaaaaacgagatctcta 10665
Query: 348 tatttctcggggatctttaaacaggaaaaatgaaaccaatcatcacatccatcacatcct 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10664 tatttctcggggatctttaaacaggaaaaatgaaaccaatcatcacatccatcacatcct 10605
Query: 408 accatcaactccccagtgtctggtttcttacatatacaataaacttctttcccagttttt 467
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct: 10604 accatcaactccccagtgtctggtttcttacatatacaataaacttcttccccag-tttt 10546
Query: 468 tgggtcgtgttttcctgctgtcatacctgggggcaccaactaagttaatgacattctgaa 527
||||||||| |||||||||||||||||| |||||||||||| || ||||||||| ||||
Sbjct: 10545 tgggtcgtg-tttcctgctgtcatacct-ggggcaccaact-aggtaatgacatcgtgaa 10489
Query: 528 tactggaaattcaatccctatactgggagttatctt 563
||||| ||||||||| |||||||| |||||||||||
Sbjct: 10488 tactgtaaattcaat-cctatact-ggagttatctt 10455
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8841
Number of Sequences: 1807
Number of extensions: 8841
Number of successful extensions: 61
Number of sequences better than 1.0e-20: 1
length of query: 948
length of database: 10,358,551
effective HSP length: 16
effective length of query: 932
effective length of database: 10,329,639
effective search space: 9627223548
effective search space used: 9627223548
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)