BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC3ZG09FM1.SCF screened BAC_end
(897 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig581 1437 0.0
>3x_Contig581
Length = 1616
Score = 1437 bits (725), Expect = 0.0
Identities = 759/767 (98%), Gaps = 3/767 (0%)
Strand = Plus / Plus
Query: 86 tagataactacacccaaacaaaggctgtcagaatggccattgaccacccaaactattaag 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 843 tagataactacacccaaacaaaggctgtcagaatggccattgaccacccaaactattaag 902
Query: 146 aagttcggaaaaataatggactcatacacgaacaaatactcacatagagatgattaacaa 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 903 aagttcggaaaaataatggactcatacacgaacaaatactcacatagagatgattaacaa 962
Query: 206 ctgccctctctctgtattatagctcacacaaatgaaatgaccccggaggtctactaacag 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 963 ctgccctctctctgtattatagctcacacaaatgaaatgaccccggaggtctactaacag 1022
Query: 266 tatttcctatttagcccgtccgactaaaacaagcacaagcaattaatgataaagctattt 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1023 tatttcctatttagcccgtccgactaaaacaagcacaagcaattaatgataaagctattt 1082
Query: 326 tttcattttatagctcatctgcaaatgaaaattagcatcattctacatatatacatacat 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1083 tttcattttatagctcatctgcaaatgaaaattagcatcattctacatatatacatacat 1142
Query: 386 tcttattaaaaattcacatcgttatcaacccttcatctgtttattactttaaacctatat 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1143 tcttattaaaaattcacatcgttatcaacccttcatctgtttattactttaaacctatat 1202
Query: 446 ctgatttgccatgcactatgaactacacagaccttcattaaacggaatgagtgataagtc 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1203 ctgatttgccatgcactatgaactacacagaccttcattaaacggaatgagtgataagtc 1262
Query: 506 attttctgtcactatgatagtcaacaaaaagtgaatgggacataccgtcctcgaggactg 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1263 attttctgtcactatgatagtcaacaaaaagtgaatgggacataccgtcctcgaggactg 1322
Query: 566 ccagcatccgtacattatgtatcataataacacccacacattanaacagaatgtaattgc 625
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1323 ccagcatccgtacattatgtatcataataacacccacacattaaaacagaatgtaattgc 1382
Query: 626 ctttataggaaagtcacgtgaaattcaaaaaaat-aaaacccgaatcagaatatgcccgg 684
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 1383 ctttataggaaagtcacgtgaaattcaaaaaaataaaaacccgaatcagaatatgcccgg 1442
Query: 685 ctcgacactgagctggtagggaagaatcttggctgctncttcattgcgatccccccagct 744
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1443 ctcgacactgagctggtagggaagaatcttggctgctccttcattgcgatccccccagct 1502
Query: 745 ggcgagagtttctctttgtctctgcctgaatctgcccagcagaaacgttcttacggtagt 804
||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 1503 ggcgagagtttctctctgtctctgcctggatctgcccagcagaaacgttcttacggtagt 1562
Query: 805 ggcttcgccca-cctaggcaatattcacccttcctatgcccttggtg 850
||| ||||||| |||||||||||| ||||||||||||||||||||||
Sbjct: 1563 ggc-tcgcccagcctaggcaatatccacccttcctatgcccttggtg 1608
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5851
Number of Sequences: 1807
Number of extensions: 5851
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 897
length of database: 10,358,551
effective HSP length: 16
effective length of query: 881
effective length of database: 10,329,639
effective search space: 9100411959
effective search space used: 9100411959
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)