BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC3ZG09RM1.SCF screened BAC_end
(919 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1751 1419 0.0
>3x_Contig1751
Length = 24682
Score = 1419 bits (716), Expect = 0.0
Identities = 772/780 (98%), Gaps = 8/780 (1%)
Strand = Plus / Minus
Query: 47 catcgactctggatccattcaaagagttacattgcaaataatcataagttgcaactctta 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24165 catcgactctggatccattcaaagagttacattgcaaataatcataagttgcaactctta 24106
Query: 107 aatcaacattatcagctgcagagtaaccaacagggatagatctattggagtgcttttcga 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24105 aatcaacattatcagctgcagagtaaccaacagggatagatctattggagtgcttttcga 24046
Query: 167 tatattgtttcatatctctttgcacagctctgatataaggagggtcgatctcagcataat 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24045 tatattgtttcatatctctttgcacagctctgatataaggagggtcgatctcagcataat 23986
Query: 227 cttcatcgtcattaataatttcattaccggaaaagaaaccaataacgtttggatagttct 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23985 cttcatcgtcattaataatttcattaccggaaaagaaaccaataacgtttggatagttct 23926
Query: 287 tgaatgcttcaataaatttgaacacacgctccaaatagtaatctttgtatgaaccgcttg 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23925 tgaatgcttcaataaatttgaacacacgctccaaatagtaatctttgtatgaaccgcttg 23866
Query: 347 ggtcagctctgttcaaactttcaccccattcaccagagtttacatctaaaataacataga 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23865 ggtcagctctgttcaaactttcaccccattcaccagagtttacatctaaaataacataga 23806
Query: 407 taccggcattgtttaaaatcgtcatacatttatcatgatttaaatctgggttcaaagaat 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23805 taccggcattgtttaaaatcgtcatacatttatcatgatttaaatctgggttcaaagaat 23746
Query: 467 agattctgatcgtgttgattcccaattgttggaatacaaaagcgtccctagcacataact 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23745 agattctgatcgtgttgattcccaattgttggaatacaaaagcgtccctagcacataact 23686
Query: 527 cttcatccgttaaagcatccttgcccgatttcgaactatatgacgaagaaccgcctggtt 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23685 cttcatccgttaaagcatccttgcccgatttcgaactatatgacgaagaaccgcctggtt 23626
Query: 587 gataatcaatacctctaacaaaaaacactgtgttatcactagcatcattttttggagaag 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23625 gataatcaatacctctaacaaaaaacactgtgttatcactagcatcattttttggagaag 23566
Query: 647 atggttgaataaatctaccacctttggtatgaattggcaacaatgcgtcaactaatgagc 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23565 atggttgaataaatctaccacctttggtatgaattggcaacaatgcgtcaactaatgagc 23506
Query: 707 ttgaaatcaaagcactcaataaaatagaaaggaagaaccatgttttttattggtttgaat 766
||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||| ||
Sbjct: 23505 ttgaaatcaaagcactcaataaaatag-aaggaagaaccatg-tttttatt-gtttg-at 23450
Query: 767 ttatttttcgtaattacgtcggtaagtgtggttttagcgttgctccttttcttttgctaa 826
||||||||||| ||||||||||| ||||| |||||||||||||| |||||||||||||||
Sbjct: 23449 ttatttttcgt-attacgtcggt-agtgt-gttttagcgttgct-cttttcttttgctaa 23394
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7814
Number of Sequences: 1807
Number of extensions: 7814
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 1
length of query: 919
length of database: 10,358,551
effective HSP length: 16
effective length of query: 903
effective length of database: 10,329,639
effective search space: 9327664017
effective search space used: 9327664017
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)