BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC3ZG10FM1.SCF screened BAC_end (907 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1173 678 0.0 >3x_Contig1173 Length = 7454 Score = 678 bits (342), Expect = 0.0 Identities = 439/462 (95%), Gaps = 7/462 (1%) Strand = Plus / Minus Query: 88 gaatgccagtaaaactaccacaattacaacatactatcttgcaatcgtgcagaatcaatg 147 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3937 gaatgccagtaaaactaccacaattacaacatactatcttgcaatcgtgcagaatcaatg 3878 Query: 148 tcacaattttttgaatataaagacactataaaagagggtgatttggtgcttgcatggttg 207 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3877 tcacaattttttgaatataaagacactataaaagagggtgatttggtgcttgcatggttg 3818 Query: 208 tccagggacaatttgaagccaatcaccgtgaaagctggcgaggttttcaacactcgttat 267 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3817 tccagggacaatttgaagccaatcaccgtgaaagctggcgaggttttcaacactcgttat 3758 Query: 268 ggtgctttctcacattcagatatgattggaaaaccatttggttctcaaattgctattaga 327 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3757 ggtgctttctcacattcagatatgattggaaaaccatttggttctcaaattgctattaga 3698 Query: 328 acgaagggaagtaatagatttggtttcatttacgttctgcagccgaccccggaactatgt 387 |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 3697 acgaagggaagtaatagatttggtttcattcacgttctgcagccgaccccggaactatgg 3638 Query: 388 tc-atttttttacct-acagaacccaaattgtttatacaccagattcctcctat-ttatg 444 || || | ||||||| |||||||||| ||||||||||||||||||||||||||| | ||| Sbjct: 3637 tctatctctttacctcacagaacccagattgtttatacaccagattcctcctatatcatg 3578 Query: 445 ccgcggattgaatgcaatcctatatctagggtcatttgaacaaggtacggcgtcaaggtt 504 | |||||| || |||||||||| ||||||||||| ||||| |||||||| ||| ||||| Sbjct: 3577 cagcggatggagtgcaatcctagatctagggtca-ttgaagcaggtacggggtc-aggtt 3520 Query: 505 ccttttcttatgccgtttgccaaaatttgcaggtcatttatt 546 |||||||| ||| |||||||| | || ||||||||||||||| Sbjct: 3519 ccttttctcatg-cgtttgcc-agatctgcaggtcatttatt 3480 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 14,357 Number of Sequences: 1807 Number of extensions: 14357 Number of successful extensions: 103 Number of sequences better than 1.0e-20: 1 length of query: 907 length of database: 10,358,551 effective HSP length: 16 effective length of query: 891 effective length of database: 10,329,639 effective search space: 9203708349 effective search space used: 9203708349 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)