BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC3ZG10RM1.SCF screened BAC_end
(935 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1335 827 0.0
>3x_Contig1335
Length = 8696
Score = 827 bits (417), Expect = 0.0
Identities = 437/441 (99%), Gaps = 2/441 (0%)
Strand = Plus / Minus
Query: 52 attaatcagattttctcacttaaaacactaagatactatgtcaattcctagtaaatccta 111
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5992 attaatcagattttctcacttaaaacactaagatactatgtcaattcctagtaaatccta 5933
Query: 112 ctaatttgcttctgaactttattgatctcgcgtaaacacttacctgaggacatatgcttc 171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5932 ctaatttgcttctgaactttattgatctcgcgtaaacacttacctgaggacatatgcttc 5873
Query: 172 gatcattagacagatctctttgtattctgtacttttccaaggtttcgacacgattttttt 231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5872 gatcattagacagatctctttgtattctgtacttttccaaggtttcgacacgattttttt 5813
Query: 232 cgattctaaatagagaatttccgaaaacggtagataaacgtgactatcatgtggatagaa 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5812 cgattctaaatagagaatttccgaaaacggtagataaacgtgactatcatgtggatagaa 5753
Query: 292 atggggaaggtgacaacacttggattcgggattcggtgaggaaccacaatatacctagaa 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5752 atggggaaggtgacaacacttggattcgggattcggtgaggaaccacaatatacctagaa 5693
Query: 352 aagtatcctagattcattgaacaacaggtagttcttaatgattaaattacggtatacatt 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5692 aagtatcctagattcattgaacaacaggtagttcttaatgattaaattacggtatacatt 5633
Query: 412 ttccaatgttcacgtgacttaaaactgtcatgtgaccgacacaaaggatacactacttta 471
||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |||
Sbjct: 5632 ttccaatgttcacgtgactcaaaactgtcatgtgaccgacacaaagaatacactac-tta 5574
Query: 472 gatttcccaatttaggagaaa 492
|||||||||| ||||||||||
Sbjct: 5573 gatttcccaa-ttaggagaaa 5554
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8781
Number of Sequences: 1807
Number of extensions: 8781
Number of successful extensions: 78
Number of sequences better than 1.0e-20: 1
length of query: 935
length of database: 10,358,551
effective HSP length: 16
effective length of query: 919
effective length of database: 10,329,639
effective search space: 9492938241
effective search space used: 9492938241
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)