BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC3ZG11FM1.SCF screened BAC_end
(929 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig954 1039 0.0
>3x_Contig954
Length = 3755
Score = 1039 bits (524), Expect = 0.0
Identities = 590/606 (97%), Gaps = 6/606 (0%)
Strand = Plus / Minus
Query: 87 tacatgtagagttgttatacttcaattagagtacaataagctacttgagttggtcgcttt 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 tacatgtagagttgttatacttcaattagagtacaataagctacttgagttggtcgcttt 574
Query: 147 tagtttggtatgtgtggtattttggcatattttggtaaatcatttggatcaactcttact 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 tagtttggtatgtgtggtattttggcatattttggtaaatcatttggatcaactcttact 514
Query: 207 gatgaattccaatatctatacgagaaagacctaacaggaccaatacagtcatgtaatagt 266
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 gatgaattccaagaactatacgagaaagacctaacaggaccaatacagtcatgtaatagt 454
Query: 267 aatacgttatttaatgaactgataccgtatatcgtgagaagaggtccaaactatgcgtca 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 aatacgttatttaatgaactgataccgtatatcgtgagaagaggtccaaactatgcgtca 394
Query: 327 ttgagatcgttatctgaaattaatgctatgttgttctcatctgtattatctttaagaaca 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 ttgagatcgttatctgaaattaatgctatgttgttctcatctgtattatctttaagaaca 334
Query: 387 ccattcacgaaacanagcgtcatggtacaagatcgttaccttctacagtataacggggaa 446
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 ccattcacgaaacaaagcgtcatggtacaagatcgttaccttctacagtataacggggaa 274
Query: 447 ctgtataatgatgatactgttgaaaattgtgaacacagtgatacggaatatatttcttca 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 ctgtataatgatgatactgttgaaaattgtgaacacagtgatacggaatatatttcttca 214
Query: 507 cttttggaaaagcattctgttgaagaggtagtaaggaaatgttatggagaatttgcgtac 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 cttttggaaaagcattctgttgaagaggtagtaaggaaatgttatggagaatttgcgtac 154
Query: 567 gcatttactgatcttcaagaacgaaaggtatattttgggagagatagcatcggttaagcg 626
||| ||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||
Sbjct: 153 gcaattactgatcttcaagaacgaaaggtatatatagggagagatagcatcgg-taagcg 95
Query: 627 aagcttgag-ctacatattactttgatgatgagctattttattaccattgtaagtggaag 685
|| ||||| ||||||||||| |||||||||||||| | ||| ||| ||||||||||||
Sbjct: 94 aa--ttgagcctacatattac-ttgatgatgagcta-tatatccccagtgtaagtggaag 39
Query: 686 atgtga 691
||||||
Sbjct: 38 atgtga 33
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8133
Number of Sequences: 1807
Number of extensions: 8133
Number of successful extensions: 56
Number of sequences better than 1.0e-20: 1
length of query: 929
length of database: 10,358,551
effective HSP length: 16
effective length of query: 913
effective length of database: 10,329,639
effective search space: 9430960407
effective search space used: 9430960407
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)