BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC3ZG11RM1.SCF screened BAC_end
(932 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig672 1193 0.0
>3x_Contig672
Length = 2319
Score = 1193 bits (602), Expect = 0.0
Identities = 658/673 (97%), Gaps = 3/673 (0%)
Strand = Plus / Minus
Query: 48 ctcaatccttttac-ccaagctttcctttgagcatgtactctgatgccatccatacttac 106
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2136 ctcaatccttttacaccaagctttcctttgagcatgtactctgatgccatccatacttac 2077
Query: 107 gtctttttctttcccgttctgttcctgttttctttgacatgaaaatgaaattcaatgtta 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2076 gtctttttctttcccgttctgttcctgttttctttgacatgaaaatgaaattcaatgtta 2017
Query: 167 acttcaacaaaagacaacaagatactcgatagaaaacagtgaaaggatgaatctgaatat 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2016 acttcaacaaaagacaacaagatactcgatagaaaacagtgaaaggatgaatctgaatat 1957
Query: 227 aaagatataaccaggagtaattactacgaaaatttggaactgcaaaagtgaagtacattc 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1956 aaagatataaccaggagtaattactacgaaaatttggaactgcaaaagtgaagtacattc 1897
Query: 287 gagtgttaaatggatggcttctcagaatatgaccctgaaaagggtatacccttggcaatt 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1896 gagtgttaaatggatggcttctcagaatatgaccctgaaaagggtatacccttggcaatt 1837
Query: 347 gatcctaatttaattagtattccggtgtctacttcattaacgactaatggtaacggtgac 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1836 gatcctaatttaattagtattccggtgtctacttcattaacgactaatggtaacggtgac 1777
Query: 407 gaaggtgttaacaatgaagatgccacagtatttgcagctgacgatgctgataatgcaaag 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1776 gaaggtgttaacaatgaagatgccacagtatttgcagctgacgatgctgataatgcaaag 1717
Query: 467 tcgcaaaaatcattaattcagaacccgtatgagtactttggtcagatgccgcttgagcag 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1716 tcgcaaaaatcattaattcagaacccgtatgagtactttggtcagatgccgcttgagcag 1657
Query: 527 tttattccactgatgttgcaacagagaggtactggttccaaatttgcagacatacatgaa 586
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1656 tttattccactgatgttgcaacagagaggtactggtaccaaatttgcagacatacatgaa 1597
Query: 587 gagacacttctcgaggaaatttctcgaganaacagttctaaaagttataacgctattcca 646
|||||||| |||||||||||||||||||| ||||||||||||||| |||||||||||| |
Sbjct: 1596 gagacactcctcgaggaaatttctcgagaaaacagttctaaaagtaataacgctattcaa 1537
Query: 647 ggagaagattatgatgaccgcgctttttcagaatgttgattgaaaaactaccactggggg 706
| ||||||| |||||||| |||| | |||||||||||||| ||||||||||||| | ||
Sbjct: 1536 gaagaagataatgatgacagcgc-tattcagaatgttgatgaaaaaactaccact-gtgg 1479
Query: 707 tcaatgaaggcgt 719
|||||||||||||
Sbjct: 1478 tcaatgaaggcgt 1466
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8384
Number of Sequences: 1807
Number of extensions: 8384
Number of successful extensions: 74
Number of sequences better than 1.0e-20: 1
length of query: 932
length of database: 10,358,551
effective HSP length: 16
effective length of query: 916
effective length of database: 10,329,639
effective search space: 9461949324
effective search space used: 9461949324
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)