BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC3ZG12FM1.SCF screened BAC_end
(917 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1652 1267 0.0
>3x_Contig1652
Length = 14842
Score = 1267 bits (639), Expect = 0.0
Identities = 689/699 (98%), Gaps = 5/699 (0%)
Strand = Plus / Minus
Query: 87 taatttcttcacaatttctacgcttgcatcgatctcctctacaataccagtcgcagctat 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11935 taatttcttcacaatttctacgcttgcatcgatctcctctacaataccagtcgcagctat 11876
Query: 147 tctgaaacttccagttgtatcactgttagcaactatttgaacaccacagaaagtggtatt 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11875 tctgaaacttccagttgtatcactgttagcaactatttgaacaccacagaaagtggtatt 11816
Query: 207 tggcgagcacaagggaccatagaaagaagctgtacaataagcatgttctggagtatactt 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11815 tggcgagcacaagggaccatagaaagaagctgtacaataagcatgttctggagtatactt 11756
Query: 267 caacattctagtcctggttctagagtcactagtggtgtatattggtagagtttggaaacg 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11755 caacattctagtcctggttctagagtcactagtggtgtatattggtagagtttggaaacg 11696
Query: 327 tctccaaccaagagataaaactaaaggatcatttgtcttgagaatctttttgtgccaacg 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11695 tctccaaccaagagataaaactaaaggatcatttgtcttgagaatctttttgtgccaacg 11636
Query: 387 atgtcttctgactcttgcattaataattccgaacttcaattctgtgggaagaagacctcc 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11635 atgtcttctgactcttgcattaataattccgaacttcaattctgtgggaagaagacctcc 11576
Query: 447 cataattactggatactttgggttgaaattttcgatgaattccataggaaccttatcgaa 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11575 cataattactggatactttgggttgaaattttcgatgaattccataggaaccttatcgaa 11516
Query: 507 gacaatacgaacataagacccagctttcataccttcgatttgttgcctttgttcaggagt 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11515 gacaatacgaacataagacccagctttcataccttcgatttgttgcctttgttcaggagt 11456
Query: 567 catagattccagttcggctttattgatttctaattgtttagcaatcttagccttctgtaa 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11455 catagattccagttcggctttattgatttctaattgtttagcaatcttagccttctgtaa 11396
Query: 627 ttcgtaccaggtatcgtattcattttcagggtcttctccaaagttgtctccttctttcat 686
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 11395 ttcgtaccaggtatcgtattcattttcagggtcttctccaaagttgtctccttcttccat 11336
Query: 687 ttcgaattgtaacccttaatttcttctttttttgcggcattcaattcacgcttcttcatc 746
|||||||||||| |||||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct: 11335 ttcgaattgtaa-ccttaatttc-tctttttttgcggcattcaattcacgc-tcttcatc 11279
Query: 747 ctggggcaaaatcctttctttttttctttttcggaatca 785
||||| | |||||| ||||||| ||||| |||| |||||
Sbjct: 11278 ctgggtc-aaatcc-ttcttttcttcttcttcgaaatca 11242
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7917
Number of Sequences: 1807
Number of extensions: 7917
Number of successful extensions: 66
Number of sequences better than 1.0e-20: 1
length of query: 917
length of database: 10,358,551
effective HSP length: 16
effective length of query: 901
effective length of database: 10,329,639
effective search space: 9307004739
effective search space used: 9307004739
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)