BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC3ZG12RM1.SCF screened BAC_end
(922 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1261 1322 0.0
>3x_Contig1261
Length = 9103
Score = 1322 bits (667), Expect = 0.0
Identities = 734/751 (97%), Gaps = 4/751 (0%)
Strand = Plus / Minus
Query: 41 gcttgagttattatcagcacagcaccagcatcggcatcagcaccagcatcagcaccacag 100
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2234 gcttgagttattatcagcacagcaccagcatcggcatcagcaccagcatcagcaccacag 2175
Query: 101 ttatacctcaatgagtaccggtaccgatggtttccagaaaagtggtaaatccaaatcaaa 160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2174 ttatacctcaatgagtaccggtaccgatggtttccagaaaagtggtaaatccaaatcaaa 2115
Query: 161 ttccaattctatcaaggtacgatctttcgatgagcaaatagatgaggctagaaatgctat 220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2114 ttccaattctatcaaggtacgatctttcgatgagcaaatagatgaggctagaaatgctat 2055
Query: 221 tcgtggaagcgaattattacagagcttacatcaatcactaactccattccaggttacaca 280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2054 tcgtggaagcgaattattacagagcttacatcaatcactaactccattccaggttacaca 1995
Query: 281 tgtacgatgtcttgcgctaggtaatttccatcaagatttccctgctaggtttcaattggc 340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1994 tgtacgatgtcttgcgctaggtaatttccatcaagatttccctgctaggtttcaattggc 1935
Query: 341 gcttttgttagaacttctctatttgttgaaagtatcgagatgctcattttatgatcctgt 400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1934 gcttttgttagaacttctctatttgttgaaagtatcgagatgctcattttatgatcctgt 1875
Query: 401 ctttgacgatgaagacttggcatatattaacggtaatggctcttggtcagtagacgaatc 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1874 ctttgacgatgaagacttggcatatattaacggtaatggctcttggtcagtagacgaatc 1815
Query: 461 ttcgccattcttggacgtaaatccaagccagattatgttctttctaccacacgctccgtt 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1814 ttcgccattcttggacgtaaatccaagccagattatgttctttctaccacacgctccgtt 1755
Query: 521 agacctaacggaaaaagttatagcagaagaatcaccaaaaagttggttagctaatcattt 580
||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1754 agacctaacggaaaaggttatagcagaagaatcaccaaaagtttggttagctaatcattt 1695
Query: 581 atttcaacatactgacaggttgaccaa-gtacaattataccattaatatcctttattttg 639
||| |||||||||||||||||||| || |||||||||||| || ||||||||||||| ||
Sbjct: 1694 attacaacatactgacaggttgacaaaggtacaattatacgataaatatcctttattatg 1635
Query: 640 ccaattggtcaattatatcaattctaacacagctactaagatccggtcagcaacagatac 699
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1634 caaattggtcaattatatcaattctaacacagctactaagatccggtcagcaacagatac 1575
Query: 700 tgatgaagatgggttttcaaacttttacttcctcgagaaaacgtaagtcttaaggccaga 759
||||||||||||| |||||||||||||| |||||||||||||||||||| |||||| |||
Sbjct: 1574 tgatgaagatggg-tttcaaacttttacatcctcgagaaaacgtaagtc-taaggcaaga 1517
Query: 760 aataatttcaaagaggactgtcctcgaatat 790
||||| |||||||| ||||||| ||||||||
Sbjct: 1516 aataagttcaaaga-gactgtcatcgaatat 1487
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7785
Number of Sequences: 1807
Number of extensions: 7785
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 1
length of query: 922
length of database: 10,358,551
effective HSP length: 16
effective length of query: 906
effective length of database: 10,329,639
effective search space: 9358652934
effective search space used: 9358652934
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)