BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC3ZH01FM1.SCF screened BAC_end
(896 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1664 1283 0.0
>3x_Contig1664
Length = 15696
Score = 1283 bits (647), Expect = 0.0
Identities = 692/702 (98%), Gaps = 4/702 (0%)
Strand = Plus / Minus
Query: 88 gtagctggaaacaactggcaagtatgttaggaatcggttttctgcgttttttttagttcc 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1521 gtagctggaaacaactggcaagtatgttaggaatcggttttctgcgttttttttagttcc 1462
Query: 148 ctatagtatagttccaagcgaaaaaagaaatttgcgcacacccaaaaaagggaagaaacc 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1461 ctatagtatagttccaagcgaaaaaagaaatttgcgcacacccaaaaaagggaagaaacc 1402
Query: 208 ttttgatgtggaatatgtgcgtgtgtgcgtgtgtgcgtgcgttttttggcctcgaacgaa 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1401 ttttgatgtggaatatgtgcgtgtgtgcgtgtgtgcgtgcgttttttggcctcgaacgaa 1342
Query: 268 aagaattacacgaacatgcagcagaacaacggatattaatccgcaaaaatatggaaataa 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1341 aagaattacacgaacatgcagcagaacaacggatattaatccgcaaaaatatggaaataa 1282
Query: 328 taatagaaacgtaatcagcaaagaaaccagaaaagaaaaagactggaaggagaagaaaaa 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1281 taatagaaacgtaatcagcaaagaaaccagaaaagaaaaagactggaaggagaagaaaaa 1222
Query: 388 agtacacttgagaaaggccgtagtgattctagtacgaaaaatgtatgcagatactttata 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1221 agtacacttgagaaaggccgtagtgattctagtacgaaaaatgtatgcagatactttata 1162
Query: 448 ctgctgaaaagtcttgttgtattttcttttggctccaggaggcgaaaagttgatacaagt 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1161 ctgctgaaaagtcttgttgtattttcttttggctccaggaggcgaaaagttgatacaagt 1102
Query: 508 tcaactgagtcagcctaatgagacagtttcaacactattacagaataacgaaatgacagg 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1101 tcaactgagtcagcctaatgagacagtttcaacactattacagaataacgaaatgacagg 1042
Query: 568 gaatcagaggaggaaacgngaaataactcgtgtgatgaatgtattagtacttaactccgt 627
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1041 gaatcagaggaggaaacggaaaataactcgtgtgatgaatgtattagtacttaactccgt 982
Query: 628 aaaagcgcttttatttcctgcttacgttaataaccagtgagaaggatatacagactttct 687
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 981 aaaagcgcttttatttcctgcttacgttaataaccagtgagaagaatatacagactttct 922
Query: 688 gattccaacttttggtcttctttt-aagccttatcttttggttttatgcctcgaacaacc 746
|||||||||||||||||||||||| |||||||||| | |||||||||||||||||||| |
Sbjct: 921 gattccaacttttggtcttcttttaaagccttatc-tctggttttatgcctcgaacaa-c 864
Query: 747 tttttaaactgaagcacggatcttttaaaatgtttagcgtga 788
|| | ||||||||||||||||| |||||||||||||||||||
Sbjct: 863 ttctaaaactgaagcacggatc-tttaaaatgtttagcgtga 823
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7154
Number of Sequences: 1807
Number of extensions: 7154
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 1
length of query: 896
length of database: 10,358,551
effective HSP length: 16
effective length of query: 880
effective length of database: 10,329,639
effective search space: 9090082320
effective search space used: 9090082320
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)