BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC3ZH01RM1.SCF screened BAC_end
(876 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1572 1528 0.0
>3x_Contig1572
Length = 12810
Score = 1528 bits (771), Expect = 0.0
Identities = 812/823 (98%), Gaps = 2/823 (0%)
Strand = Plus / Plus
Query: 48 atggtaagatacctatcgatgtgaacgaaatgaaaatagatctgatgtccatttcctcac 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5000 atggtaagatacctatcgatgtgaacgaaatgaaaatagatctgatgtccatttcctcac 5059
Query: 108 acaaaatttatggtccaaagggaattggtgccatttacgttagaagaaagccaagagtca 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5060 acaaaatttatggtccaaagggaattggtgccatttacgttagaagaaagccaagagtca 5119
Query: 168 gattagatccgcttatctccggtggtggtcaagaaagaggtttacgttctggtacattgg 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5120 gattagatccgcttatctccggtggtggtcaagaaagaggtttacgttctggtacattgg 5179
Query: 228 ctccacctttggttgccggcttcggggaagcagcaagattgatgatgaaagaatacgaga 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5180 ctccacctttggttgccggcttcggggaagcagcaagattgatgatgaaagaatacgaga 5239
Query: 288 acgactcaaatcacattaaaagattatctgacaaattaatgaacgctttgttatctattg 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5240 acgactcaaatcacattaaaagattatctgacaaattaatgaacgctttgttatctattg 5299
Query: 348 accatacaatcttaaacggttctgctgaccatcgttacccaggttgtgttaacatttcat 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5300 accatacaatcttaaacggttctgctgaccatcgttacccaggttgtgttaacatttcat 5359
Query: 408 tcgcatatgtcgaaggtgaatccttattgatggctcttagagatattgctttgagttctg 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5360 tcgcatatgtcgaaggtgaatccttattgatggctcttagagatattgctttgagttctg 5419
Query: 468 gttctgcttgtacttcggcatctttagaaccatcttatgtgttgcatgcattgggtaaag 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5420 gttctgcttgtacttcggcatctttagaaccatcttatgtgttgcatgcattgggtaaag 5479
Query: 528 atgatgctttagcacactcttccatcagattcggtattggtagattcaccactgatgaag 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5480 atgatgctttagcacactcttccatcagattcggtattggtagattcaccactgatgaag 5539
Query: 588 aaattgattacgttatcaaggctatcacggaaagagttgatttcctaagagagttgtccc 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5540 aaattgattacgttatcaaggctatcacggaaagagttgatttcctaagagagttgtccc 5599
Query: 648 cattatgggagatggtcaaggaaggtattgacttgaactccatcgaatggtcaggtcatt 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5600 cattatgggagatggtcaaggaaggtattgacttgaactccatcgaatggtcaggtcatt 5659
Query: 708 aagctggaacaaaagtgatctatatcatagattcatcattttattttcttgctagagtgc 767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5660 aagctggaacaaaagtgatctatatcatagattcatcattttattttcttgctagagtgc 5719
Query: 768 ataccaaatctttatctgttttcttcatttacatggatctccggtaatacctgggggaac 827
|||||||||||||||||| ||||| |||||||| ||||||| || ||| || |||||||
Sbjct: 5720 ataccaaatctttatctggtttctcaatttacat-gatctcccgttataactcggggaac 5778
Query: 828 tactaccgtatttactttggttcctcgatttcaaagttcaatc 870
||||||||||| |||||| |||||||||||||||||| |||||
Sbjct: 5779 tactaccgtatatacttt-gttcctcgatttcaaagtacaatc 5820
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6592
Number of Sequences: 1807
Number of extensions: 6592
Number of successful extensions: 34
Number of sequences better than 1.0e-20: 1
length of query: 876
length of database: 10,358,551
effective HSP length: 16
effective length of query: 860
effective length of database: 10,329,639
effective search space: 8883489540
effective search space used: 8883489540
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)