BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC3ZH02FM1.SCF screened BAC_end
(950 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1303 1150 0.0
>3x_Contig1303
Length = 8112
Score = 1150 bits (580), Expect = 0.0
Identities = 647/664 (97%), Gaps = 4/664 (0%)
Strand = Plus / Minus
Query: 87 ttgtggtttttatttacaagaacgctaatcataatcactttacaagaaattcagaaggaa 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1632 ttgtggtttttatttacaagaacgctaatcataatcactttacaagaaattcagaaggaa 1573
Query: 147 tttatcccaattttttcacaggtaaggactgggttttattataattattattttttttat 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1572 tttatcccaattttttcacaggtaaggactgggttttattataattattattttttttat 1513
Query: 207 tgacctttgaactttatcttcccttgtaaaggttaatttgccattgcataagttcatcta 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1512 tgacctttgaactttatcttcccttgtaaaggttaatttgccattgcataagttcatcta 1453
Query: 267 tctatagagcgttttgtctccggagtgctaaaatatcacaatgtcagataatgggccaga 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1452 tctatagagcgttttgtctccggagtgctaaaatatcacaatgtcagataatgggccaga 1393
Query: 327 tttgtggcttgagaagatcaagaaatgtcaggctttgacggagtctgagatgaaacagct 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1392 tttgtggcttgagaagatcaagaaatgtcaggctttgacggagtctgagatgaaacagct 1333
Query: 387 atgcgagatgatgaaggaactcttaatggaagaatcgaatattcagccggttcaatcgcc 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1332 atgcgagatgatgaaggaactcttaatggaagaatcgaatattcagccggttcaatcgcc 1273
Query: 447 ggtgactgtttgtggtgatattcacggacaatttcatgaccttttagaactattcagaac 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1272 ggtgactgtttgtggtgatattcacggacaatttcatgaccttttagaactattcagaac 1213
Query: 507 tgctggtgggtttcctgatcaagtaaactatatttttcttggtgactatgtagatcgtgg 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1212 tgctggtgggtttcctgatcaagtaaactatatttttcttggtgactatgtagatcgtgg 1153
Query: 567 ttattacagtttggagacgtttacacttcttatgtgtttgaaagtgaaatattctttcag 626
||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |||
Sbjct: 1152 ttattacagtttggagacgttcacacttcttatgtgtttgaaagtgaaatatccttccag 1093
Query: 627 aattactttggtttaaaggaaattatgagtcgaggcaaatttcacaattttat-tgtttt 685
||||||||||| ||| ||||||| ||||||||||||||||| ||||| ||||| |||||
Sbjct: 1092 aattactttgg-ttagaggaaatcatgagtcgaggcaaattacacaagtttatgggtttt 1034
Query: 686 atgaagaatgtttaaattaattttggttccacaacggtttgggagtttttgttgtcaagt 745
|||| ||||||||||| ||| | ||||||||||||||||||| || | ||||||||||||
Sbjct: 1033 atgaggaatgtttaaa-taagtatggttccacaacggtttggaag-tattgttgtcaagt 976
Query: 746 gttt 749
||||
Sbjct: 975 gttt 972
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,611
Number of Sequences: 1807
Number of extensions: 11611
Number of successful extensions: 136
Number of sequences better than 1.0e-20: 1
length of query: 950
length of database: 10,358,551
effective HSP length: 16
effective length of query: 934
effective length of database: 10,329,639
effective search space: 9647882826
effective search space used: 9647882826
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)