BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC3ZH02RM1.SCF screened BAC_end
(886 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig821 1136 0.0
>3x_Contig821
Length = 3127
Score = 1136 bits (573), Expect = 0.0
Identities = 625/637 (98%), Gaps = 4/637 (0%)
Strand = Plus / Minus
Query: 249 ttgagatttgataggcattttcaacgtccaactctccttcttttcagatctgttatttcc 308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3127 ttgagatttgataggcattttcaacgtccaactctccttcttttcagatctgttatttcc 3068
Query: 309 aaatcattacgattttatcattaccaaattaaactatattttactaatactatgtcctag 368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3067 aaatcattacgattttatcattaccaaattaaactatattttactaatactatgtcctag 3008
Query: 369 taccatccgtataaaccatctttctgatttcctaactaaagatatgttagtgaagtatat 428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3007 taccatccgtataaaccatctttctgatttcctaactaaagatatgttagtgaagtatat 2948
Query: 429 tggatctctttctgaggagtctaccgaattcaaagaattatgtaactgtttgcctgagga 488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2947 tggatctctttctgaggagtctaccgaattcaaagaattatgtaactgtttgcctgagga 2888
Query: 489 tgtcgaaaagggaaaagaaaaccttttgaaatgtgtaagaggtccattctttcagcaagc 548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2887 tgtcgaaaagggaaaagaaaaccttttgaaatgtgtaagaggtccattctttcagcaagc 2828
Query: 549 agttga-cattttggacttagctacgaagcagagctattcgggacaacaactctcacaaa 607
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2827 agttgaccattttggacttagctacgaagcagagctattcgggacaacaactctcacaaa 2768
Query: 608 tgtttggatattcgtataccggagaaggaccacgagctctactggaaggacttagaaata 667
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2767 tgtttggatattcgtataccggagaaggaccacgagctctactggaaggacttagaaata 2708
Query: 668 agggcctccaggaaaagctaaagaagcaagattcacaatcagaataagaaaatgggaaca 727
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 2707 agggcctccaggaaaagctaaagaagcaagattcacaatcagaataagaaaatggaaaca 2648
Query: 728 aaa-taatactgaccgttggcagcagctgttaaataagtatctacataagaattttaatg 786
||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct: 2647 aaattaatactgaccgttggcagcagctggtaaataagtatctacataagatttttaatg 2588
Query: 787 gaccacttatatatgagaaataatataggtatatatgtgggagaagatgg-tgtttagcc 845
||||||||||||||||||| ||||||||||||||||||||||||||||| |||| ||||
Sbjct: 2587 gaccacttatatatgagaataaatataggtatatatgtgggagaagatggttgttaagcc 2528
Query: 846 tgactagtccca-ctggcagcccagtgttactcatct 881
|||||||||||| ||| ||||||||||| ||||||||
Sbjct: 2527 tgactagtcccatctgacagcccagtgtaactcatct 2491
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8029
Number of Sequences: 1807
Number of extensions: 8029
Number of successful extensions: 209
Number of sequences better than 1.0e-20: 1
length of query: 886
length of database: 10,358,551
effective HSP length: 16
effective length of query: 870
effective length of database: 10,329,639
effective search space: 8986785930
effective search space used: 8986785930
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)