BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC3ZH03RM1.SCF screened BAC_end
(936 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1106 1122 0.0
>3x_Contig1106
Length = 5510
Score = 1122 bits (566), Expect = 0.0
Identities = 653/672 (97%), Gaps = 9/672 (1%)
Strand = Plus / Plus
Query: 46 atctccattcattctaaacacaaattcat--cataaaagcaaggctttctgttagtattc 103
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 2620 atctccattcattctaaacacaaattcaatccataaaagcaaggctttctgttagtattc 2679
Query: 104 tcgaaaactctcgaccacttaaaagcgtacacatacgttcattatgttatttgacgattg 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2680 tcgaaaactctcgaccacttaaaagcgtacacatacgttcattatgttatttgacgattg 2739
Query: 164 gataggttcaaagtcggtgcgtaaagttcttgctgtcgctgtgacgtgatttcaacagaa 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2740 gataggttcaaagtcggtgcgtaaagttcttgctgtcgctgtgacgtgatttcaacagaa 2799
Query: 224 cttttgttcgatgactttggtagaattaacatttcacaggattttttttttattcaaagg 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2800 cttttgttcgatgactttggtagaattaacatttcacaggattttttttttattcaaagg 2859
Query: 284 gctttctcatactggcatctcgacaataagttacagagcgaaac-ggatagagtttt-gg 341
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct: 2860 gctttctcatactggcatctcgacaataagttacagagcgaaacgggatagagttttggg 2919
Query: 342 ttgcatttatattatcgtgcttgtgatagaagagtgtttatatggttcaatagaatatac 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2920 ttgcatttatattatcgtgcttgtgatagaagagtgtttatatggttcaatagaatatac 2979
Query: 402 acctaattgagtgttaaataataattttaaaagccttcatcacctagcttactttctaaa 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2980 acctaattgagtgttaaataataattttaaaagccttcatcacctagcttactttctaaa 3039
Query: 462 tgcactatgttctgatcaatttctgaaagattagttttcaaggatatcgcttcctcgaag 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3040 tgcactatgttctgatcaatttctgaaagattagttttcaaggatatcgcttcctcgaag 3099
Query: 522 cgcctttccttggcagctgaattaagcatattttcgactaagtattcgtgttcatttcaa 581
||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct: 3100 cgcctttccttggcagctgaattaagcatattttcgactaagtatcgttgttcattcaaa 3159
Query: 582 accataagttctttctcttgtactttttttacttncgcaattgttaaattattgaacaaa 641
||||||||||| ||||| ||||| || ||||||| |||||||||||||||||||||||||
Sbjct: 3160 accataagttc-ttctc-tgtac-ttctttacttccgcaattgttaaattattgaacaaa 3216
Query: 642 agatccgatgatgttgtgactttttactttctgtgacacatggtttcaagatttctggta 701
|||||||||||||||||||| || |||||||||||||||| || ||||||||||||||||
Sbjct: 3217 agatccgatgatgttgtgac-ttctactttctgtgacaca-gggttcaagatttctggta 3274
Query: 702 tttttttcaagg 713
||||||||||||
Sbjct: 3275 tttttttcaagg 3286
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 15,474
Number of Sequences: 1807
Number of extensions: 15474
Number of successful extensions: 120
Number of sequences better than 1.0e-20: 1
length of query: 936
length of database: 10,358,551
effective HSP length: 16
effective length of query: 920
effective length of database: 10,329,639
effective search space: 9503267880
effective search space used: 9503267880
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)