BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC3ZH04FM1.SCF screened BAC_end (878 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig927 1110 0.0 >3x_Contig927 Length = 3708 Score = 1110 bits (560), Expect = 0.0 Identities = 663/691 (95%), Gaps = 5/691 (0%) Strand = Plus / Minus Query: 83 tccttcgatggttagtcctcactgacaactcaattagacgacaaagtaccttgatcgttg 142 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1056 tccttcgatggttagtcctcactgacaactcaattagacgacaaagtaccttgatcgttg 997 Query: 143 tttattagccaaagtcagcttcattcaaggttcataaaattacttaaaatacacatatgg 202 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 996 tttattagccaaagtcagcttcattcaaggttcataaaattacttaaaatacacatatgg 937 Query: 203 cttactatttttttttaagatcgtgttttatttgaaaagttgtcctttttgaaaattgga 262 ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 936 cttactattttgaaataagatcgtgttttatttgaaaagttgtcctttttgaaaattgga 877 Query: 263 agaatccgaagagtatgcaaaggacgtaatggtagggtaataattacccgaatttgtgcc 322 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 876 agaatccgaagagtatgcaaaggacgtaatggtagggtaataattacccgaatttgtgcc 817 Query: 323 agacgcatctctacagattctatgcgtaagagaatgctagaagagatagcatatacgaga 382 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 816 agacgcatctctacagattctatgcgtaagagaatgctagaagagatagcatatacgaga 757 Query: 383 gtggtatacataggtctatatatctatacatgtatagtgtagatgtgaacatctgggcaa 442 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 756 gtggtatacataggtctatatatctatacatgtatagtgtagatgtgaacatctgggcaa 697 Query: 443 cctttactgattaatgtagcatattaagcaatcttttgataggatttctgntattgtgac 502 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 696 cctttactgattaatgtagcatattaagcaatcttttgataggatttctgttattgtgac 637 Query: 503 tggaacccccatttgtggtagcattgcgtgactgcagagcgtttcgtaggagcaaatctt 562 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 636 tggaacccccatttgtggtagcatcgcgtgactgcagagcgtttcgtaggagcaaatctt 577 Query: 563 gttcttcatgatttttttccgatggtttattaatgtcttgaataaacctgtttgaaggac 622 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 576 gttcttcatgatttttttccgatggtttattagtgtcttgaataaacctgtttgaaggac 517 Query: 623 tctgatccggcccat-ttcctgcttttgctt-aaatgtttacctaccaaagaactttgtt 680 ||||||||||||||| | |||||| |||||| || ||||||||||||||| |||||||| Sbjct: 516 tctgatccggcccatctccctgctcttgcttcaattgtttacctaccaaaagactttgtt 457 Query: 681 ttggctttcccgga-ttagggcattttttgccaaggaa-aaaaataaggtaatttgccct 738 | |||||||| ||||| |||| || |||||||| | ||||||||||||||||||| Sbjct: 456 gctgtcttcccggatttaggccattcttgtccaaggaagataaataaggtaatttgccct 397 Query: 739 tcttccaaatgactgaat-tttaaaccacgt 768 |||||||||||||||||| || ||||||||| Sbjct: 396 tcttccaaatgactgaatcttcaaaccacgt 366 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7425 Number of Sequences: 1807 Number of extensions: 7425 Number of successful extensions: 52 Number of sequences better than 1.0e-20: 1 length of query: 878 length of database: 10,358,551 effective HSP length: 16 effective length of query: 862 effective length of database: 10,329,639 effective search space: 8904148818 effective search space used: 8904148818 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)