BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC3ZH04FM1.SCF screened BAC_end
         (878 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig927                                                         1110   0.0  

>3x_Contig927 
          Length = 3708

 Score = 1110 bits (560), Expect = 0.0
 Identities = 663/691 (95%), Gaps = 5/691 (0%)
 Strand = Plus / Minus

                                                                        
Query: 83   tccttcgatggttagtcctcactgacaactcaattagacgacaaagtaccttgatcgttg 142
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1056 tccttcgatggttagtcctcactgacaactcaattagacgacaaagtaccttgatcgttg 997

                                                                        
Query: 143  tttattagccaaagtcagcttcattcaaggttcataaaattacttaaaatacacatatgg 202
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 996  tttattagccaaagtcagcttcattcaaggttcataaaattacttaaaatacacatatgg 937

                                                                        
Query: 203  cttactatttttttttaagatcgtgttttatttgaaaagttgtcctttttgaaaattgga 262
            |||||||||||    |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 936  cttactattttgaaataagatcgtgttttatttgaaaagttgtcctttttgaaaattgga 877

                                                                        
Query: 263  agaatccgaagagtatgcaaaggacgtaatggtagggtaataattacccgaatttgtgcc 322
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 876  agaatccgaagagtatgcaaaggacgtaatggtagggtaataattacccgaatttgtgcc 817

                                                                        
Query: 323  agacgcatctctacagattctatgcgtaagagaatgctagaagagatagcatatacgaga 382
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 816  agacgcatctctacagattctatgcgtaagagaatgctagaagagatagcatatacgaga 757

                                                                        
Query: 383  gtggtatacataggtctatatatctatacatgtatagtgtagatgtgaacatctgggcaa 442
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756  gtggtatacataggtctatatatctatacatgtatagtgtagatgtgaacatctgggcaa 697

                                                                        
Query: 443  cctttactgattaatgtagcatattaagcaatcttttgataggatttctgntattgtgac 502
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 696  cctttactgattaatgtagcatattaagcaatcttttgataggatttctgttattgtgac 637

                                                                        
Query: 503  tggaacccccatttgtggtagcattgcgtgactgcagagcgtttcgtaggagcaaatctt 562
            |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 636  tggaacccccatttgtggtagcatcgcgtgactgcagagcgtttcgtaggagcaaatctt 577

                                                                        
Query: 563  gttcttcatgatttttttccgatggtttattaatgtcttgaataaacctgtttgaaggac 622
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 576  gttcttcatgatttttttccgatggtttattagtgtcttgaataaacctgtttgaaggac 517

                                                                        
Query: 623  tctgatccggcccat-ttcctgcttttgctt-aaatgtttacctaccaaagaactttgtt 680
            ||||||||||||||| | |||||| |||||| || |||||||||||||||  ||||||||
Sbjct: 516  tctgatccggcccatctccctgctcttgcttcaattgtttacctaccaaaagactttgtt 457

                                                                        
Query: 681  ttggctttcccgga-ttagggcattttttgccaaggaa-aaaaataaggtaatttgccct 738
               |  |||||||| ||||| |||| ||  |||||||| | |||||||||||||||||||
Sbjct: 456  gctgtcttcccggatttaggccattcttgtccaaggaagataaataaggtaatttgccct 397

                                           
Query: 739  tcttccaaatgactgaat-tttaaaccacgt 768
            |||||||||||||||||| || |||||||||
Sbjct: 396  tcttccaaatgactgaatcttcaaaccacgt 366


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7425
Number of Sequences: 1807
Number of extensions: 7425
Number of successful extensions: 52
Number of sequences better than 1.0e-20: 1
length of query: 878
length of database: 10,358,551
effective HSP length: 16
effective length of query: 862
effective length of database: 10,329,639
effective search space: 8904148818
effective search space used: 8904148818
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)