BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC3ZH04RM1.SCF screened BAC_end
(885 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1247 1425 0.0
>3x_Contig1247
Length = 7218
Score = 1425 bits (719), Expect = 0.0
Identities = 806/823 (97%), Gaps = 9/823 (1%)
Strand = Plus / Plus
Query: 48 atagaccggttagaaaaggtgaccactttatcgttagaggtggtatgagacaagtagagt 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5347 atagaccggttagaaaaggtgaccactttatcgttagaggtggtatgagacaagtagagt 5406
Query: 108 t-aaggtcgtagacgttgagcctgaagagtacggtgttgttgcccaagatactgtcattc 166
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5407 tcaaggtcgtagacgttgagcctgaagagtacggtgttgttgcccaagatactgtcattc 5466
Query: 167 atagtgaaggtgagccaattaacagagaagatgaagaaaataacatcaatgaagtcggtt 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5467 atagtgaaggtgagccaattaacagagaagatgaagaaaataacatcaatgaagtcggtt 5526
Query: 227 atgatgatattggtggttgtcgtaagcaaatggctcaaattagagaattggtcgaattgc 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5527 atgatgatattggtggttgtcgtaagcaaatggctcaaattagagaattggtcgaattgc 5586
Query: 287 cattgagacacccacaactatttaaggccattggtatcaaacctccgaagggtattttga 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5587 cattgagacacccacaactatttaaggccattggtatcaaacctccgaagggtattttga 5646
Query: 347 tgtacggtcctccaggtaccggtaaaactctaatggccagagctgtggctaacgagacag 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5647 tgtacggtcctccaggtaccggtaaaactctaatggccagagctgtggctaacgagacag 5706
Query: 407 gtgcatttttcttcttaatcaatggtccagaagtcatgtccaagatggctggtgaatctg 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5707 gtgcatttttcttcttaatcaatggtccagaagtcatgtccaagatggctggtgaatctg 5766
Query: 467 aatccaacttgagaaaggctttcgaagaagcagaaaagaatgctccggccattattttta 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5767 aatccaacttgagaaaggctttcgaagaagcagaaaagaatgctccggccattattttta 5826
Query: 527 tcgatgaaattgattctattgcaccaaagcgtgacaagactaacggtgaagtggaaagaa 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5827 tcgatgaaattgattctattgcaccaaagcgtgacaagactaacggtgaagtggaaagaa 5886
Query: 587 gagtcgtttctcaattattgactctaatggatggtatgaaggctagatccaacatcgttg 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5887 gagtcgtttctcaattattgactctaatggatggtatgaaggctagatccaacatcgttg 5946
Query: 647 tcattgcagccaccaatagacccaattctatcgatcctgctttgagaagatttcgtagat 706
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 5947 tcattgcagccaccaatagacccaattctatcgatcctgctttgagaagattcggtagat 6006
Query: 707 ttgatagagaaagtcgatattggtgtttcctgacgttactggtagattgggaaatcttac 766
||||||||| ||||||||||||||| |||||||||||||||||||||| |||| ||||||
Sbjct: 6007 ttgatagag-aagtcgatattggtg-ttcctgacgttactggtagatt-ggaagtcttac 6063
Query: 767 gtattcacactaaaaatatgaagtttggctgacgacctccaatttaaaaaagtttgccgc 826
||||||||||||||||||||||| |||||||||||| | | | ||| ||||||| |||||
Sbjct: 6064 gtattcacactaaaaatatgaag-ttggctgacgacgt-cgacttagaaaagttggccgc 6121
Query: 827 tgaaacccattggttattgttggtgctgatattggcctcccta 869
||||||||| |||||| |||||||||||||||| |||||||||
Sbjct: 6122 tgaaaccca-tggtta-tgttggtgctgatatt-gcctcccta 6161
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6932
Number of Sequences: 1807
Number of extensions: 6932
Number of successful extensions: 82
Number of sequences better than 1.0e-20: 1
length of query: 885
length of database: 10,358,551
effective HSP length: 16
effective length of query: 869
effective length of database: 10,329,639
effective search space: 8976456291
effective search space used: 8976456291
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)