BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC3ZH05FM1.SCF screened BAC_end
         (920 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig929                                                         1174   0.0  

>3x_Contig929 
          Length = 3696

 Score = 1174 bits (592), Expect = 0.0
 Identities = 600/603 (99%)
 Strand = Plus / Plus

                                                                        
Query: 88   ttcaaagaccttgaccttttaattggtttccttgaattcactttagagggagaagaagtc 147
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3080 ttcaaagaccttgaccttttaattggtttccttgaattcactttagagggagaagaagtc 3139

                                                                        
Query: 148  tacgatcctgaaattgtaaaaaatattttcaaactgatggtgcatattgaaaggttgaat 207
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3140 tacgatcctgaaattgtaaaaaatattttcaaactgatggtgcatattgaaaggttgaat 3199

                                                                        
Query: 208  attaatataccttattccaaggaagcaatgcacaagttaggactgaattgggatgacttc 267
            ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3200 attaatataccttacaccaaggaagcaatgcacaagttaggactgaattgggatgacttc 3259

                                                                        
Query: 268  attgatacagaatatttcctacagagcataacaaaaatgaaaagaagacttcatgaactg 327
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3260 attgatacagaatatttcctacagagcataacaaaaatgaaaagaagacttcatgaactg 3319

                                                                        
Query: 328  aagtcttctcgctctcctgctgatatgtccaggatattgcaaagtcttgattgccttgtc 387
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3320 aagtcttctcgctctcctgctgatatgtccaggatattgcaaagtcttgattgccttgtc 3379

                                                                        
Query: 388  tttttcatagaaaagtatcatgaggataaacagtataaagtgcccacaatgcattccaaa 447
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3380 tttttcatagaaaagtatcatgaggataaacagtataaagtgcccacaatgcattccaaa 3439

                                                                        
Query: 448  gaaagggaagaagtgtgccattcagcacatatacttcactcttctggcattttactgctt 507
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3440 gaaagggaagaagtgtgccattcagcacatatacttcactcttctggcattttactgctt 3499

                                                                        
Query: 508  tactgctacgaatctttaaccaaattaggtttcgactggcagtattatcccgaggaatcg 567
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3500 tactgctacgaatctttaaccaaattaggtttcgactggcagtattatcccgaggaatcg 3559

                                                                        
Query: 568  ctaaaagttattgaacttgccaaagatatgcttcanaaagattcctcgaaaacaattcat 627
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 3560 ctaaaagttattgaacttgccaaagatatgcttcaaaaagattcctcgaaaacaattcat 3619

                                                                        
Query: 628  gaaaaggccaatattttaactttgatacaaaccttagaaaaaggaatcattagggcaatg 687
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3620 gaaaaggccaatattttaactttgatacaaaccttagaaaaaggaatcattagggcaatg 3679

               
Query: 688  gat 690
            |||
Sbjct: 3680 gat 3682


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7509
Number of Sequences: 1807
Number of extensions: 7509
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 920
length of database: 10,358,551
effective HSP length: 16
effective length of query: 904
effective length of database: 10,329,639
effective search space: 9337993656
effective search space used: 9337993656
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)