BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC3ZH05RM1.SCF screened BAC_end
(935 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1759 1374 0.0
>3x_Contig1759
Length = 25622
Score = 1374 bits (693), Expect = 0.0
Identities = 735/743 (98%), Gaps = 5/743 (0%)
Strand = Plus / Plus
Query: 44 cttgtatttcgagccgggtatctcatgagagacaatagtatatccattcactgaaactac 103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10028 cttgtatttcgagccgggtatctcatgagagacaatagtatatccattcactgaaactac 10087
Query: 104 caaatcagctctttcatctaacatcaaggggcatcggaatttgattctcttgatttcctt 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10088 caaatcagctctttcatctaacatcaaggggcatcggaatttgattctcttgatttcctt 10147
Query: 164 tgttcttttcactttcgattttatgtacgatgcattaatgggattagtactagggccgtg 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10148 tgttcttttcactttcgattttatgtacgatgcattaatgggattagtactagggccgtg 10207
Query: 224 tgaggatagccatgattgtgcttcgttgatctttgaaccccatttcaagatatctgcata 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10208 tgaggatagccatgattgtgcttcgttgatctttgaaccccatttcaagatatctgcata 10267
Query: 284 catagaatcgtcaaatggtttatcttcagaaccaatgaaaaatgtgacaaaattgatata 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10268 catagaatcgtcaaatggtttatcttcagaaccaatgaaaaatgtgacaaaattgatata 10327
Query: 344 atagtcatataaatcgtcgacaacttttctaagacgagatctgctgtcaacgttcaagaa 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10328 atagtcatataaatcgtcgacaacttttctaagacgagatctgctgtcaacgttcaagaa 10387
Query: 404 ctcagccggtttgtcgtcatcagtaaaaaaaaatattttcttgttagtcagttgcttctg 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10388 ctcagccggtttgtcgtcatcagtaaaaaaaaatattttcttgttagtcagttgcttctg 10447
Query: 464 tccttctatcggttgtaaaaatgtttctctaactttgatcaatactggagaaagttcaat 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10448 tccttctatcggttgtaaaaatgtttctctaactttgatcaatactggagaaagttcaat 10507
Query: 524 tgggttgtttgggtctgcgataggaatctcatctttgagaagtattctatcctgttctat 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10508 tgggttgtttgggtctgcgataggaatctcatctttgagaagtattctatcctgttctat 10567
Query: 584 atcttccaacagatcagatacacgtttcatattcttatagttcacatcacgtaacggtat 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10568 atcttccaacagatcagatacacgtttcatattcttatagttcacatcacgtaacggtat 10627
Query: 644 tagttcatacacattatctttagcgttaggatgagaacagttgtaaatataacagccaac 703
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 10628 tagttcatacacattatcttcagcgttaggatgagaacagttgtaaatataacagccaac 10687
Query: 704 tgcagtacttggcataacaactaccaatttgtgacatttaaatcattttantgaatntta 763
||||||||||||||||||||||||||| |||||||| |||||||| |||| ||||| ||
Sbjct: 10688 tgcagtacttggcataacaactaccaa-ttgtgaca-ttaaatca-tttagtgaatc-ta 10743
Query: 764 aaatcttctaagagttgaatttt 786
||||| |||||||||||||||||
Sbjct: 10744 aaatc-tctaagagttgaatttt 10765
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8541
Number of Sequences: 1807
Number of extensions: 8541
Number of successful extensions: 58
Number of sequences better than 1.0e-20: 1
length of query: 935
length of database: 10,358,551
effective HSP length: 16
effective length of query: 919
effective length of database: 10,329,639
effective search space: 9492938241
effective search space used: 9492938241
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)