BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC3ZH06FM1.SCF screened BAC_end
(1058 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig640 561 e-159
>3x_Contig640
Length = 3164
Score = 561 bits (283), Expect = e-159
Identities = 325/335 (97%), Gaps = 3/335 (0%)
Strand = Plus / Minus
Query: 85 acaacaacacctctaccagaagtatccacagagtctaaaagaccagtcaaatcttccatg 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1121 acaacaacacctctaccagaagtatccacagagtctaaaagaccagtcaaatcttccatg 1062
Query: 145 acgtcatccatcatttcttcttcatcatcgtctggacctacaactaataatcgggaacca 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1061 acgtcatccatcatttcttcttcatcatcgtctggacctacaactaataatcgggaacca 1002
Query: 205 gaaacagccttttttaaatcatttgcagcaatttttacacctagagcagccttgacttct 264
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1001 gaaacagccttttccaaatcatttgcagcaatttttacacctagagcagccttgacttct 942
Query: 265 ttgtgatgttgatattcagacttcaaacgtaactcacgtaagggttgaggtgtcaacaag 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 941 ttgtgatgttgatattcagacttcaaacgtaactcacgtaagggttgaggtgtcaacaag 882
Query: 325 gctctgatattcgtcacaatcggaccgttcataccacataaaaccgattctgtcaccctt 384
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |
Sbjct: 881 gctctgatattcgtcacaatcggaccgttcataccacataaaa-agattctgtaaccc-t 824
Query: 385 ttctttagtaaccctttagatagaataacatcgat 419
|||| ||||| || ||||||||||||||||||||
Sbjct: 823 ctcttaagtaa-ccattagatagaataacatcgat 790
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9168
Number of Sequences: 1807
Number of extensions: 9168
Number of successful extensions: 95
Number of sequences better than 1.0e-20: 1
length of query: 1058
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1042
effective length of database: 10,329,639
effective search space: 10763483838
effective search space used: 10763483838
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)