BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC3ZH06RM1.SCF screened BAC_end
         (966 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1377                                                         973   0.0  

>3x_Contig1377 
          Length = 8397

 Score =  973 bits (491), Expect = 0.0
 Identities = 550/563 (97%), Gaps = 5/563 (0%)
 Strand = Plus / Plus

                                                                        
Query: 39   aaaaaatggttcc-gggggaaaaatgtttgactgcttcctttttttttctaagtggattt 97
            ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1179 aaaaaatggttccagggggaaaaatgtttgactgcttcctttttttttctaagtggattt 1238

                                                                        
Query: 98   tttttcaagattttcaccatacaaagacaaaaacgttgaccagttggacgtaatcgttct 157
            ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 1239 tttttcaagattttcaccatacaaagacaaaaacgttgaacagttggacgtaatcgttct 1298

                                                                        
Query: 158  aaaagaaccggtagatcaataaaaaaaagataaacagtccggttattgttgttgatatcc 217
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1299 aaaagaaccggtagatcaataaaaaaaagataaacagtccggttattgttgttgatatcc 1358

                                                                        
Query: 218  aacccctcgctaagctatgaaaattgaaaggtgtctattgggagacgtatggtgccacat 277
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1359 aacccctcgctaagctatgaaaattgaaaggtgtctattgggagacgtatggtgccacat 1418

                                                                        
Query: 278  ataccaggggcacaggtttgccgtagaagcgatagaaagcatgcaataaacgacggttgt 337
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1419 ataccaggggcacaggtttgccgtagaagcgatagaaagcatgcaataaacgacggttgt 1478

                                                                        
Query: 338  ttatccgaatctgaacccaaaaaccaaagacaaacacgcagcagaaaaacaaaatgtttt 397
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1479 ttatccgaatctgaacccaaaaaccaaagacaaacacgcagcagaaaaacaaaatgtttt 1538

                                                                        
Query: 398  tccgcaaagcactttgtacgtcttctattttcttttttttgtcttagtttttccgagatg 457
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1539 tccgcaaagcactttgtacgtcttctattttcttttttttgtcttagtttttccgagatg 1598

                                                                        
Query: 458  agcagctggaaatactcagtagaaagctcagttggaaaaaccacaccaatttccacgcat 517
            |||||||||||||||||||||||||||||||| ||||||||||||||| || ||||||||
Sbjct: 1599 agcagctggaaatactcagtagaaagctcagtaggaaaaaccacaccacttcccacgcat 1658

                                                                        
Query: 518  tttgacgcagaattcccattctgagcattatttttttcccattcattgagccttcctatg 577
             |||||||| ||||||||||||||||| || | ||||||||||||||||| |||||||||
Sbjct: 1659 cttgacgcaaaattcccattctgagca-taatattttcccattcattgag-cttcctatg 1716

                                   
Query: 578  ttaaggtttatcccgacgtttta 600
             |||||||||| |||||||||||
Sbjct: 1717 -taaggtttat-ccgacgtttta 1737


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,745
Number of Sequences: 1807
Number of extensions: 10745
Number of successful extensions: 94
Number of sequences better than 1.0e-20: 1
length of query: 966
length of database: 10,358,551
effective HSP length: 16
effective length of query: 950
effective length of database: 10,329,639
effective search space: 9813157050
effective search space used: 9813157050
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)