BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC3ZH06RM1.SCF screened BAC_end (966 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1377 973 0.0 >3x_Contig1377 Length = 8397 Score = 973 bits (491), Expect = 0.0 Identities = 550/563 (97%), Gaps = 5/563 (0%) Strand = Plus / Plus Query: 39 aaaaaatggttcc-gggggaaaaatgtttgactgcttcctttttttttctaagtggattt 97 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1179 aaaaaatggttccagggggaaaaatgtttgactgcttcctttttttttctaagtggattt 1238 Query: 98 tttttcaagattttcaccatacaaagacaaaaacgttgaccagttggacgtaatcgttct 157 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 1239 tttttcaagattttcaccatacaaagacaaaaacgttgaacagttggacgtaatcgttct 1298 Query: 158 aaaagaaccggtagatcaataaaaaaaagataaacagtccggttattgttgttgatatcc 217 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1299 aaaagaaccggtagatcaataaaaaaaagataaacagtccggttattgttgttgatatcc 1358 Query: 218 aacccctcgctaagctatgaaaattgaaaggtgtctattgggagacgtatggtgccacat 277 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1359 aacccctcgctaagctatgaaaattgaaaggtgtctattgggagacgtatggtgccacat 1418 Query: 278 ataccaggggcacaggtttgccgtagaagcgatagaaagcatgcaataaacgacggttgt 337 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1419 ataccaggggcacaggtttgccgtagaagcgatagaaagcatgcaataaacgacggttgt 1478 Query: 338 ttatccgaatctgaacccaaaaaccaaagacaaacacgcagcagaaaaacaaaatgtttt 397 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1479 ttatccgaatctgaacccaaaaaccaaagacaaacacgcagcagaaaaacaaaatgtttt 1538 Query: 398 tccgcaaagcactttgtacgtcttctattttcttttttttgtcttagtttttccgagatg 457 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1539 tccgcaaagcactttgtacgtcttctattttcttttttttgtcttagtttttccgagatg 1598 Query: 458 agcagctggaaatactcagtagaaagctcagttggaaaaaccacaccaatttccacgcat 517 |||||||||||||||||||||||||||||||| ||||||||||||||| || |||||||| Sbjct: 1599 agcagctggaaatactcagtagaaagctcagtaggaaaaaccacaccacttcccacgcat 1658 Query: 518 tttgacgcagaattcccattctgagcattatttttttcccattcattgagccttcctatg 577 |||||||| ||||||||||||||||| || | ||||||||||||||||| ||||||||| Sbjct: 1659 cttgacgcaaaattcccattctgagca-taatattttcccattcattgag-cttcctatg 1716 Query: 578 ttaaggtttatcccgacgtttta 600 |||||||||| ||||||||||| Sbjct: 1717 -taaggtttat-ccgacgtttta 1737 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 10,745 Number of Sequences: 1807 Number of extensions: 10745 Number of successful extensions: 94 Number of sequences better than 1.0e-20: 1 length of query: 966 length of database: 10,358,551 effective HSP length: 16 effective length of query: 950 effective length of database: 10,329,639 effective search space: 9813157050 effective search space used: 9813157050 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 51 (101.6 bits)