BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC3ZH07FM1.SCF screened BAC_end
(921 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig465 811 0.0
>3x_Contig465
Length = 2281
Score = 811 bits (409), Expect = 0.0
Identities = 484/501 (96%), Gaps = 6/501 (1%)
Strand = Plus / Plus
Query: 87 ctcaggaaattttaagttattgaactttgttatcactgtcgttaagtgcattgaggcgtc 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 ctcaggaaattttaagttattgaactttgttatcactgtcgttaagtgcattgaggcgtc 406
Query: 147 aaagtttttggcaagtataagtctagtattatccctagtgcttgaatctaattttggtaa 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 aaagtttttggcaagtataagtctagtattatccctagtgcttgaatctaattttggtaa 466
Query: 207 ggctgctagcgaatatttcataatcttgttaacaaaatcagcattgttcatcatggatat 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 ggctgctagcgaatatttcataatcttgttaacaaaatcagcattgttcatcatggatat 526
Query: 267 taagagataaacgtattggtctatttgtgagcagtcaattttctccggtatgtttctttt 326
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 taagagataaaagtattggtctatttgtgagcagtcaattttctccggtatgtttctttt 586
Query: 327 aattcgcaaagatatcataaatatgttcataatgtatttgaatagagatggtgattgcgc 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 aattcgcaaagatatcataaatatgttcataatgtatttgaatagagatggtgattgcgc 646
Query: 387 aaaggcaattaattgctttagtagttgggcaatcggttcaaagccaataaaagttaacca 446
|||||||||||||||||||||||||| ||||||| ||||||||| ||||||||| |||||
Sbjct: 647 aaaggcaattaattgctttagtagtt-ggcaatc-gttcaaagcgaataaaagtaaacca 704
Query: 447 ttaaaatcctgttatattcgaactatcactctgactgatcttttgaactttatctaaact 506
|||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct: 705 ttaaaatcctgtaatattcgaactatcactctgactgatc-tttgaactttatctaagct 763
Query: 507 gccaataagttttgtttggataatcgga-aattccctgaaaagatttcctgtattggaaa 565
|||| |||||||||||| ||||||| || ||| | |||| ||||||||||||| |||||
Sbjct: 764 gccagtaagttttgttt-gataatctgagaatccgctgagaagatttcctgta-tggaag 821
Query: 566 tttttgataaagtagggtctt 586
|||||||||||||||||||||
Sbjct: 822 tttttgataaagtagggtctt 842
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8334
Number of Sequences: 1807
Number of extensions: 8334
Number of successful extensions: 83
Number of sequences better than 1.0e-20: 1
length of query: 921
length of database: 10,358,551
effective HSP length: 16
effective length of query: 905
effective length of database: 10,329,639
effective search space: 9348323295
effective search space used: 9348323295
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)