BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC3ZH07RM1.SCF screened BAC_end
(894 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1569 765 0.0
>3x_Contig1569
Length = 11625
Score = 765 bits (386), Expect = 0.0
Identities = 430/442 (97%), Gaps = 2/442 (0%)
Strand = Plus / Minus
Query: 46 atgctttggcgttccgtttgaaactgaaaagtttagattttgttttgtgacgcctggaat 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9871 atgctttggcgttccgtttgaaactgaaaagtttagattttgttttgtgacgcctggaat 9812
Query: 106 cctcattgttcccttcttcaggaacgccttctaaaacactttcattggtggcaatggaat 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9811 cctcattgttcccttcttcaggaacgccttctaaaacactttcattggtggcaatggaat 9752
Query: 166 atcttcttctatacatttcatcttcttttaacaattgctcaatgttcttttcaaagctcg 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9751 atcttcttctatacatttcatcttcttttaacaattgctcaatgttcttttcaaagctcg 9692
Query: 226 aggaatctatgctagagactgaagattccttatagattaggacatatgccgtagtgagtt 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9691 aggaatctatgctagagactgaagattccttatagattaggacatatgccgtagtgagtt 9632
Query: 286 cgttagcgtcaccaatgaattttaaaactgtttcctcgttgatggactctacagtctcat 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9631 cgttagcgtcaccaatgaattttaaaactgtttcctcgttgatggactctacagtctcat 9572
Query: 346 tatcaaacaacaaccacccgaatagatcattttttgcaaatagcaacataatgcccattg 405
||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| |
Sbjct: 9571 catcaaacaacaaccaaccgaatagatca-tttttgcaaatagcaacataatgcccatgg 9513
Query: 406 tgagggcctccttccatgtggatgactatttccgttgatttcgaaatctttacataccgg 465
|||||||||||| ||||||||||||||| ||||||||| |||| ||||||||||||| |
Sbjct: 9512 tgagggcctcctcccatgtggatgacta-ttccgttgagttcgtaatctttacatacggc 9454
Query: 466 gctattaaagcttgaacttact 487
||||| ||||||||||| ||||
Sbjct: 9453 gctatcaaagcttgaacatact 9432
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,684
Number of Sequences: 1807
Number of extensions: 10684
Number of successful extensions: 70
Number of sequences better than 1.0e-20: 1
length of query: 894
length of database: 10,358,551
effective HSP length: 16
effective length of query: 878
effective length of database: 10,329,639
effective search space: 9069423042
effective search space used: 9069423042
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)