BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC3ZH08FM1.SCF screened BAC_end (962 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1256 868 0.0 >3x_Contig1256 Length = 6519 Score = 868 bits (438), Expect = 0.0 Identities = 517/537 (96%), Gaps = 6/537 (1%) Strand = Plus / Minus Query: 86 taatgtagttgatctacccctagcatccgttgaacaacaagctaagaaatgttttaccac 145 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2052 taatgtagttgatctacccctagcatccgttgaacaacaagctaagaaatgttttaccac 1993 Query: 146 ataattataaacagttttctcgtctgaggtcattctattatcagttttcgcaatgtcaac 205 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1992 ataattataaacagttttctcgtctgaggtcattctattatcagttttcgcaatgtcaac 1933 Query: 206 acaaagaattgtattaataggtggatgcgcctgatcatcatgattaccgcttcttggcca 265 ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1932 acaaagaattggatgaataggtggatgcgcctgatcatcatgattaccgcttcttggcca 1873 Query: 266 ttggtatttatttgtactagttgaattttcgttcataaggtttgtgacataaggacccca 325 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1872 ttggtatttatttgtactagttgaattttcgttcataaggtttgtgacataaggacccca 1813 Query: 326 ttcgctatgaccctgatgtttattgagcaatgatttgaggtccgtctttgctgggaactt 385 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1812 ttcgctatgaccctgatgtttattgagcaatgatttgaggtccgtctttgctgggaactt 1753 Query: 386 atccgtttcagttcttgggtatgagatgtaaccttgttggtataa-ttttccgcagcgtc 444 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 1752 atccgtttcagttcttgggtatgagatgtaaccttgttggtataatttttccgcagcgtc 1693 Query: 445 caaaattttcttagcactaagttttgagaaccgggaacaatttttctgcatttcgaccgt 504 |||| ||||||||||||| ||||| |||||||||||||||||||||||| ||||||||| Sbjct: 1692 caaagttttcttagcacttagtttgaagaaccgggaacaatttttctgcaattcgaccgt 1633 Query: 505 ccgtaggggcaaaggttcgaaacttctttgtatctttgctagaaacatgtattacttttt 564 | |||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 1632 cgttaggggcaaagg-tcgaaacttctttgtatctttgctagaaacatgtattac-tttt 1575 Query: 565 gccctattctcgcatttttcccgatgcaatgttcattaattggacaatattgccagt 621 ||||||| ||||||| || ||||||||||||||| ||| |||||| || ||||||| Sbjct: 1574 gccctatcctcgcatgtt--ccgatgcaatgttca-taaatggacagtactgccagt 1521 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 8631 Number of Sequences: 1807 Number of extensions: 8631 Number of successful extensions: 71 Number of sequences better than 1.0e-20: 1 length of query: 962 length of database: 10,358,551 effective HSP length: 16 effective length of query: 946 effective length of database: 10,329,639 effective search space: 9771838494 effective search space used: 9771838494 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 51 (101.6 bits)