BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC3ZH09FM1.SCF screened BAC_end (1045 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1617 561 e-159 >3x_Contig1617 Length = 15119 Score = 561 bits (283), Expect = e-159 Identities = 337/347 (97%), Gaps = 6/347 (1%) Strand = Plus / Minus Query: 88 caagagaagccagcttccacgtatcatttcctatttttgaaggaaacgccatgtccccat 147 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 12829 caagagaagccagcttccacgtatcatttcctatttttgaaggaaacgccatgtccccat 12770 Query: 148 tttcatcccattatataatggtgataatgactcaactgtatatcctcccaaggttgatat 207 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 12769 tttcatcccattatataatggtgataatgactcaactgtatatcctcccaaggttgatat 12710 Query: 208 ttccttaactttagtttccttcattgaaaatttcccttcgctcatatatcaaactacttg 267 ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 12709 ttccttaacgtcagtttccttcattgaaaatttcccttcgctcatatatcaaactacttg 12650 Query: 268 atcaaagttgctatgcgattaacagcgtcaggtccaaattcatgcttgccaaataagaaa 327 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 12649 atcaaagttgctatgcgattaacagcgtcaggtccaaattcatgcttgccaaataagaaa 12590 Query: 328 attgaaaaaaagtgttgatccaagtcacgtgatattactttttcgtcacttaaataatgn 387 ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| Sbjct: 12589 attgaaaaaaagtgttgatccaagtcacgtgatataac-ttttcgtcacttaaataatg- 12532 Query: 388 aaaaatcgtttgcttgtcgaatgagaacatatcatagaacggggatt 434 |||||||| |||| ||||||||||| ||| ||||||| ||||||||| Sbjct: 12531 aaaaatcg-ttgc-tgtcgaatgag-acaaatcatag-acggggatt 12489 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 12,605 Number of Sequences: 1807 Number of extensions: 12605 Number of successful extensions: 128 Number of sequences better than 1.0e-20: 1 length of query: 1045 length of database: 10,358,551 effective HSP length: 16 effective length of query: 1029 effective length of database: 10,329,639 effective search space: 10629198531 effective search space used: 10629198531 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 51 (101.6 bits)