BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC3ZH09RM1.SCF screened BAC_end
(936 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1423 1009 0.0
>3x_Contig1423
Length = 8454
Score = 1009 bits (509), Expect = 0.0
Identities = 555/565 (98%), Gaps = 4/565 (0%)
Strand = Plus / Plus
Query: 22 cttcaattgctaaaatgaaagccttgattgaaaattttgactacgagtccatcgtagcga 81
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 cttcaattgctaaaatgaaagccttgattgaaaattttgactacgagtccatcgtagcga 253
Query: 82 tacaaaaagaatgccaagtcattagagagttcactaataagattagaatgagaatgatta 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 tacaaaaagaatgccaagtcattagagagttcactaataagattagaatgagaatgatta 313
Query: 142 aacatgattgcattgacatccaaaataatagtgacatttacataaatgaaattattccac 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 aacatgattgcattgacatccaaaataatagtgacatttacataaatgaaattattccac 373
Query: 202 cgacatggtttgaattcaaaagggaaggtccaaagtattgcgttcattgcgagtgtgtgg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 cgacatggtttgaattcaaaagggaaggtccaaagtattgcgttcattgcgagtgtgtgg 433
Query: 262 agactattgaatggcgtaacggtccgtggggtaaagcgactttgtgtaatgcatgtggtt 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 agactattgaatggcgtaacggtccgtggggtaaagcgactttgtgtaatgcatgtggtt 493
Query: 322 tgtggtatcgcaaattgaagaaaaaatttaccgcagaacaatcagcaataataatggagg 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 tgtggtatcgcaaattgaagaaaaaatttaccgcagaacaatcagcaataataatggagg 553
Query: 382 agaaaagactcttttccaataaacatgataggaaagagttttctaaatttgatgcagatg 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 agaaaagactcttttccaataaacatgataggaaagagttttctaaatttgatgcagatg 613
Query: 442 ataaaagactaaagatcattaaggactcatttgattgaccggataaacaaattcataaag 501
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 614 ataaaagactaaagatcattaaggactca-ttgattgaccggataaacaaattcataaag 672
Query: 502 gaggtatagttattcatgagtactgctgccaagctaaagcaaattaaaaccacaatagga 561
|||||| |||||| || |||||||||||||||||||||||||| ||||| || || ||||
Sbjct: 673 gaggtagagttatgcaagagtactgctgccaagctaaagcaaa-taaaagcaaaagagga 731
Query: 562 tattggatcagaaaagtgacacctc 586
|| |||||||| |||||||||||||
Sbjct: 732 ta-tggatcag-aaagtgacacctc 754
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,177
Number of Sequences: 1807
Number of extensions: 11177
Number of successful extensions: 89
Number of sequences better than 1.0e-20: 1
length of query: 936
length of database: 10,358,551
effective HSP length: 16
effective length of query: 920
effective length of database: 10,329,639
effective search space: 9503267880
effective search space used: 9503267880
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)