BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC3ZH10FM1.SCF screened BAC_end
(950 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig833 611 e-174
>3x_Contig833
Length = 3148
Score = 611 bits (308), Expect = e-174
Identities = 371/387 (95%), Gaps = 4/387 (1%)
Strand = Plus / Plus
Query: 87 tggaattctgaaccgattaactgaggattgaataaaatctctggcgctctgaatttctca 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 897 tggaattctgaaccgattaactgaggattgaataaaatctctggcgctctgaatttctca 956
Query: 147 ttatcaagttcaatctgtttcccatctggcagtctgaacattgtttgttttccgtgcatt 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 957 ttatcaagttcaatctgtttcccatctggcagtctgaacattgtttgttttccgtgcatt 1016
Query: 207 gtgtagtttttcttttcttctttcggatccaatgctatatagcacgctttctctttgatg 266
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1017 gtgtagtttttctcttcttctttcggatccaatgctatatagcacgctttctctttgatg 1076
Query: 267 attcgaacgatctctctttcgctactcgaaagcaaggcagaccccagtgcactctcgtat 326
||||||||||||||||||||||||||||||||||||| | ||||||||| ||| ||||||
Sbjct: 1077 attcgaacgatctctctttcgctactcgaaagcaagg-aaaccccagtggactttcgtat 1135
Query: 327 atg-aacttgcaaaagtttctgatatatcacgaccagctatatcaatgcttcgtatagct 385
| | |||||||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1136 aagcaacttgcaaaagcttctgatatatcacgaccagctatatcaatccttcgtatagct 1195
Query: 386 gatngtaattgtgtaaccatcgtaaactggaactgcttgtgaacaaccatcaccgg-att 444
||| |||| ||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct: 1196 gatggtaa-tgtgtaaccatcgtaaactggaactgcgtgtgaacaaccatcaccggaatc 1254
Query: 445 caatacgcattctgttggtcgcccact 471
|||||||||| |||||| |||||||||
Sbjct: 1255 caatacgcatcctgttgttcgcccact 1281
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9710
Number of Sequences: 1807
Number of extensions: 9710
Number of successful extensions: 85
Number of sequences better than 1.0e-20: 1
length of query: 950
length of database: 10,358,551
effective HSP length: 16
effective length of query: 934
effective length of database: 10,329,639
effective search space: 9647882826
effective search space used: 9647882826
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)