BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC3ZH10RM1.SCF screened BAC_end
(873 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1271 1179 0.0
>3x_Contig1271
Length = 7459
Score = 1179 bits (595), Expect = 0.0
Identities = 752/790 (95%), Gaps = 11/790 (1%)
Strand = Plus / Minus
Query: 47 ttagaggaaatccagccgtttgatttgaatgcacaaccaagggaaaaagagatcgtggat 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7206 ttagaggaaatccagccgtttgatttgaatgcacaaccaagggaaaaagagatcgtggat 7147
Query: 107 actcttggcgagatctattcaataataataacactcgaccatgtagagaaagcatttttg 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7146 actcttggcgagatctattcaataataataacactcgaccatgtagagaaagcatttttg 7087
Query: 167 aaagacgatataggcagtgaagaatacacgcggcttgccaataagctaataaatcaatac 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7086 aaagacgatataggcagtgaagaatacacgcggcttgccaataagctaataaatcaatac 7027
Query: 227 aggacatatctcagtgatgaagatgtagaggaacagtttaagagccttgatcattttaaa 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7026 aggacatatctcagtgatgaagatgtagaggaacagtttaagagccttgatcattttaaa 6967
Query: 287 gcaaaatggcaaattacggcttccaatgcaatcacaaggctggagagaggcattccagta 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6966 gcaaaatggcaaattacggcttccaatgcaatcacaaggctggagagaggcattccagta 6907
Query: 347 actgtagaacatggaaccagcggtgacacagattctttggacaattcgagagcggccgat 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6906 actgtagaacatggaaccagcggtgacacagattctttggacaattcgagagcggccgat 6847
Query: 407 aataccacaaacttaaataaatacagtggaaagcgtgttgcagaggctacaggaaatttc 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6846 aataccacaaacttaaataaatacagtggaaagcgtgttgcagaggctacaggaaatttc 6787
Query: 467 atcaccgttatggacgcattgaaactaaattacaagaccagagaacagcttcatccgtta 526
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6786 atcaccgtaatggacgcattgaaactaaattacaagaccagagaacagcttcatccgtta 6727
Query: 527 atggcggagttatttgct-agtat-aatagggtcaccagtaatgacttcgaaaacgaaag 584
|||||||||||| ||||| ||||| |||||||||||||||||||||||||||||| |||
Sbjct: 6726 atggcggagtta-ttgctaagtataaatagggtcaccagtaatgacttcgaaaaccgaag 6668
Query: 585 t-agttagtggaatggatagtcaaaatcaataaa-taccccaggacgagncacttttcga 642
| |||||||||||||||||||||||||||||||| ||||| |||||||| ||||| ||
Sbjct: 6667 taagttagtggaatggatagtcaaaatcaataaattacccaaggacgagcaactttcgga 6608
Query: 643 tgccgattct-tacagctactttactcattagaaagtgcatttaaataattttacacttt 701
|||||||||| ||||||||| ||||||||||||||||||| ||||| ||||||||||||
Sbjct: 6607 tgccgattctcaacagctactatactcattagaaagtgcatataaatcattttacacttt 6548
Query: 702 acttgaataatctgatataaaacaccttacgtaccttgaataaaaggcccacctgatgac 761
||| |||||||||||||||||||| | |||||| ||||||| |||||| || ||||||||
Sbjct: 6547 actagaataatctgatataaaaca-catacgta-cttgaatcaaaggcacagctgatgac 6490
Query: 762 tgccgggaagaattttgggggcgaattccgggaaaacaattttcctgttttgcaatggaa 821
|| |||| |||| |||||| |||| | || ||| |||| |||||||||||| || |||
Sbjct: 6489 tg-cggggagaactttgggtgcgagtcacgtgaacacaa-tttcctgttttgacat-gaa 6433
Query: 822 aatttttgaa 831
||||||||||
Sbjct: 6432 aatttttgaa 6423
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6819
Number of Sequences: 1807
Number of extensions: 6819
Number of successful extensions: 56
Number of sequences better than 1.0e-20: 1
length of query: 873
length of database: 10,358,551
effective HSP length: 16
effective length of query: 857
effective length of database: 10,329,639
effective search space: 8852500623
effective search space used: 8852500623
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)