BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC3ZH11FM1.SCF screened BAC_end (898 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig685 1072 0.0 >3x_Contig685 Length = 2775 Score = 1072 bits (541), Expect = 0.0 Identities = 598/612 (97%), Gaps = 4/612 (0%) Strand = Plus / Minus Query: 88 ttggaatacctcctgatgtgtcctggatattgttattattatcagtggtagtattcttct 147 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1391 ttggaatacctcctgatgtgtcctggatattgttattattatcagtggtagtattcttct 1332 Query: 148 tagattctgaagtaaaagatatattagttggatcaattagagattttctaggccttcctc 207 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1331 tagattctgaagtaaaagatatattagttggatcaattagagattttctaggccttcctc 1272 Query: 208 gccgtttctttacttgaagaccattttcatccaatataggttcttttttggcgcttttac 267 ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1271 gccgtttctttaccggaagaccattttcatccaatataggttcttttttggcgcttttac 1212 Query: 268 gagcttctgtggttgggttctttcgtggtcgtcctcgttgttttttgattggatttccat 327 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1211 gagcttctgtggttgggttctttcgtggtcgtcctcgttgttttttgattggatttccat 1152 Query: 328 ttgcatctaattcaaccggtacaacaggtttagttctcggtctaccacgtttacgctttt 387 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1151 ttgcatctaattcaaccggtacaacaggtttagttctcggtctaccacgtttacgctttt 1092 Query: 388 ctgctttgggcaatttaggcgtgttcaaagagcctatttgctgcaaactcgattcctctg 447 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1091 ctgctttgggcaatttaggcgtgttcaaagagcctatttgctgcaaactcgattcctctg 1032 Query: 448 acaggaatgaaagatccattgcagacgagaggttggaatcattcattgtttcagtacgcc 507 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 1031 acaggaatgaaagatccattgcagacgagaggttggaatcattcattgttacagtacgcc 972 Query: 508 atagaaatcaaacctacagatcattcatgntatgaaaccgtctgatgaaagtgtattttt 567 ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 971 atagaaatcaaacctacagatcattcatgtaatgaaaccgtctgatgaaagtgtattttt 912 Query: 568 actcttcttccaacaagattcgcaccctatt-ttctcttttgacaggacctattattttt 626 ||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| || Sbjct: 911 actcttcttccaacaagattcgcaccctattcttctcttttgacaggacctagtattctt 852 Query: 627 cttgtccattca-gatgtaaatatgatttgatctcaaa-tgggtcttttttttcc-ccaa 683 |||||||||||| ||||||||||||||||||||||||| || ||||| ||||||| | || Sbjct: 851 cttgtccattcaggatgtaaatatgatttgatctcaaattgtgtcttctttttccacgaa 792 Query: 684 agtgtaaacaaa 695 |||||||||||| Sbjct: 791 agtgtaaacaaa 780 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7893 Number of Sequences: 1807 Number of extensions: 7893 Number of successful extensions: 71 Number of sequences better than 1.0e-20: 1 length of query: 898 length of database: 10,358,551 effective HSP length: 16 effective length of query: 882 effective length of database: 10,329,639 effective search space: 9110741598 effective search space used: 9110741598 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)