BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC3ZH11RM1.SCF screened BAC_end
(925 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1613 1209 0.0
>3x_Contig1613
Length = 13977
Score = 1209 bits (610), Expect = 0.0
Identities = 677/694 (97%), Gaps = 4/694 (0%)
Strand = Plus / Minus
Query: 40 gctttcatctatttgtttatttgtttctattacaataaagccataaagttttgttcagat 99
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13893 gctttcatctatttgtttatttgtttctattacaataaagccataaagttttgttcagat 13834
Query: 100 tttttttcatagaagggaacttatggggaacttatggcactgatactattaacgttaact 159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13833 tttttttcatagaagggaacttatggggaacttatggcactgatactattaacgttaact 13774
Query: 160 ccttgatgaatgactatactttatcttacaataaactaacataggaattaatttttcatg 219
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 13773 ccttgatgaatgactatactttatcttacaataaactaacataggaattaatttctcatg 13714
Query: 220 taatctcttaggtagtttcctagcttttgcgctccttgttcaacagcgttcttcaacagg 279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13713 taatctcttaggtagtttcctagcttttgcgctccttgttcaacagcgttcttcaacagg 13654
Query: 280 tcaaattcgtcatcagcaccagacgtgaactccatgaagtttcgtccgccaagagaaccg 339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13653 tcaaattcgtcatcagcaccagacgtgaactccatgaagtttcgtccgccaagagaaccg 13594
Query: 340 cttctgtttgttcttgttccattttgtggattcaatggtcttccaaattcgtcgaactga 399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13593 cttctgtttgttcttgttccattttgtggattcaatggtcttccaaattcgtcgaactga 13534
Query: 400 tcttcgctctggccttcgccaaagtatgaggctgaagaaatagatgtggcattactgaag 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13533 tcttcgctctggccttcgccaaagtatgaggctgaagaaatagatgtggcattactgaag 13474
Query: 460 ttctgtctgagtttttcttgagcttctttacttgcctcgtcatcgtagcttccacgagaa 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13473 ttctgtctgagtttttcttgagcttctttacttgcctcgtcatcgtagcttccacgagaa 13414
Query: 520 aacacctggtctgaagagatacccttttgttctccgaa-ttttgggcaatcttacctgtg 578
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 13413 aacacctggtctgaagagatacccttttgttctccgaatttttgggcaatcttacctgtg 13354
Query: 579 tactttggacccaga-gcagcccttcttgatttcgtagttttgttttgttccttttctgc 637
||||||||| ||||| |||||||| ||||||| |||||||||||||||||||||||||
Sbjct: 13353 tactttgga-ccagaggcagccctccttgattcgttagttttgttttgttccttttctgc 13295
Query: 638 attattggaagtcataccaaacccaagtttagccacttttggttttgccgcattttttgc 697
||||||||||||||||||||||||||||||||||| ||||||||||||||| | |||||
Sbjct: 13294 attattggaagtcataccaaacccaagtttagccaactttggttttgccgca-tctttgc 13236
Query: 698 tcccaattaatcctacatgggaagccttggtttg 731
| ||| |||||||||||| |||||| ||| ||||
Sbjct: 13235 ttccagttaatcctacattggaagcattgatttg 13202
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7758
Number of Sequences: 1807
Number of extensions: 7758
Number of successful extensions: 60
Number of sequences better than 1.0e-20: 1
length of query: 925
length of database: 10,358,551
effective HSP length: 16
effective length of query: 909
effective length of database: 10,329,639
effective search space: 9389641851
effective search space used: 9389641851
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)