BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC3ZH12RM1.SCF screened BAC_end
         (1157 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1735                                                         854   0.0  

>3x_Contig1735 
          Length = 19486

 Score =  854 bits (431), Expect = 0.0
 Identities = 460/467 (98%), Gaps = 2/467 (0%)
 Strand = Plus / Minus

                                                                        
Query: 73   cttgcttgagtttgaaggaccgataggaacatacgtattggagccagggtttggaaggct 132
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9823 cttgcttgagtttgaaggaccgataggaacatacgtattggagccagggtttggaaggct 9764

                                                                        
Query: 133  aagatcatcatcggaatcaccatcaaagtttataccagatactccagttaatcctgctgc 192
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9763 aagatcatcatcggaatcaccatcaaagtttataccagatactccagttaatcctgctgc 9704

                                                                        
Query: 193  tccttcgcgggaacctgagcccgtaactcctagtgaattcgagtacgatcccttttttgg 252
            ||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||
Sbjct: 9703 tccttcgcgggaacctgagcccgtaactcctagtgaattcgagtacgatcccaagtttgg 9644

                                                                        
Query: 253  accctgcatgggattacgcgcagctgcagccggtgcagccggcccaggattatgagaaac 312
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9643 accctgcatgggattacgcgcagctgcagccggtgcagccggcccaggattatgagaaac 9584

                                                                        
Query: 313  gtagtcatgttgctgtctatgatcatacaacttagtatgctcttcagttttcaatgacgc 372
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9583 gtagtcatgttgctgtctatgatcatacaacttagtatgctcttcagttttcaatgacgc 9524

                                                                        
Query: 373  caaagaatgtgctgctgaagtagtacgagaaatctcgtgttctccggaatcaactgattt 432
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9523 caaagaatgtgctgctgaagtagtacgagaaatctcgtgttctccggaatcaactgattt 9464

                                                                        
Query: 433  atcatcagacatctctgattattttgacgcttgccctgttaggcttaacagtataataaa 492
            |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 9463 atcatcagacatctctgattatttcgacgcttgccctgttaggcttaacagtataataaa 9404

                                                           
Query: 493  taaaaaacgtattcgttgtgggaacgtttgaactttttcaatcgtgt 539
            |||||||||||||||| ||||||||| |||||| |||||||||||||
Sbjct: 9403 taaaaaacgtattcgtagtgggaacg-ttgaac-ttttcaatcgtgt 9359


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,075
Number of Sequences: 1807
Number of extensions: 13075
Number of successful extensions: 108
Number of sequences better than 1.0e-20: 1
length of query: 1157
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1141
effective length of database: 10,329,639
effective search space: 11786118099
effective search space used: 11786118099
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)