BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC40ZA01FM1.SCF screened BAC_end
(971 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1146 795 0.0
>3x_Contig1146
Length = 4612
Score = 795 bits (401), Expect = 0.0
Identities = 466/485 (96%), Gaps = 2/485 (0%)
Strand = Plus / Plus
Query: 87 accaacggcgatgaactcaagaatacgatctttgacgtccttcataccatagtgatcttc 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1105 accaacggcgatgaactcaagaatacgatctttgacgtccttcataccatagtgatcttc 1164
Query: 147 atctaagatttttttcgcctttggtatactgtactgttctttagatataataccccaagg 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1165 atctaagatttttttcgcctttggtatactgtactgttctttagatataataccccaagg 1224
Query: 207 tagggaagtgatccattccaagtagtttctaatcacaccaaattcagattgtgaagtttc 266
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1225 tagggaagtgatccaatccaagtagtttctaatcacaccaaattcagattgtgaagtttc 1284
Query: 267 gagagtcgctaatttagtgatttcgtcatcaaatactttttgaactgtttccggtaattg 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1285 gagagtcgctaatttagtgatttcgtcatcaaatactttttgaactgtttccggtaattg 1344
Query: 327 tagcttatatacacgatctttgaaagattcaattaatttatcacgaccatcatctatacc 386
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1345 tagcttagatacacgatctttgaaagattcaattaatttatcacgaccatcatctatacc 1404
Query: 387 caactctctcttgattcctttcaattgttccattagataatactctctctgcctcttttg 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1405 caactctctcttgattcctttcaattgttccattagataatactctctctgcctcttttg 1464
Query: 447 aatcttagtttcaacggcttttagagattttatttttgaagtttagcattcatcaactct 506
|||||||||||||||| | ||||||||||||| ||||| |||| ||||||||||||||||
Sbjct: 1465 aatcttagtttcaacgtc-tttagagatttta-ttttgtagttcagcattcatcaactct 1522
Query: 507 tttctttacactgtcaattgctttttaagacgttgcttatggtccaaggattaaggaatt 566
|| || ||||||||||| ||||| ||||||||||| | ||||||||||| | | |||
Sbjct: 1523 ttctttaacactgtcaatgccttttcaagacgttgctcaatgtccaaggattcaaggatt 1582
Query: 567 tcttg 571
|||||
Sbjct: 1583 tcttg 1587
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 15,981
Number of Sequences: 1807
Number of extensions: 15981
Number of successful extensions: 108
Number of sequences better than 1.0e-20: 1
length of query: 971
length of database: 10,358,551
effective HSP length: 16
effective length of query: 955
effective length of database: 10,329,639
effective search space: 9864805245
effective search space used: 9864805245
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)