BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC40ZA02FM1.SCF screened BAC_end
(986 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1454 965 0.0
>3x_Contig1454
Length = 9243
Score = 965 bits (487), Expect = 0.0
Identities = 567/587 (96%), Gaps = 5/587 (0%)
Strand = Plus / Plus
Query: 88 ccacttcataatggtagagtagttgggcatagaggcaaagcaattaaaatagatatataa 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3606 ccacttcataatggtagagtagttgggcatagaggcaaagcaattaaaatagatatataa 3665
Query: 148 tcaaacctcgtgtcaactgttgattactatgttccagaatttatttggattactttaggt 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3666 tcaaacctcgtgtcaactgttgattactatgttccagaatttatttggattactttaggt 3725
Query: 208 atatttccagtgaaatctgctacgatatagagtaaacgtctgacataaattggtagattt 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3726 atatttccagtgaaatctgctacgatatagagtaaacgtctgacataaattggtagattt 3785
Query: 268 ttgacggttgccatgaagaaattcggtgttgcggccttcggcgagtctggtcaatatgat 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3786 ttgacggttgccatgaagaaattcggtgttgcggccttcggcgagtctggtcaatatgat 3845
Query: 328 cttgcctcgaacaagttaggctcacagaataatgaattgaatgagcagctttcaatcttt 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3846 cttgcctcgaacaagttaggctcacagaataatgaattgaatgagcagctttcaatcttt 3905
Query: 388 caagttaaactagtggaatttgccaggcaacataataaagagctccgagatgttccccgt 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3906 caagttaaactagtggaatttgccaggcaacataataaagagctccgagatgttccccgt 3965
Query: 448 tttcgtgcgaagtttatgagaatgtgctcagcgataggcattgatccattatctatattc 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3966 tttcgtgcgaagtttatgagaatgtgctcagcgataggcattgatccattatctatattc 4025
Query: 508 gattagattagccattttattccatatagatgacttctactatcagattttcgtgaggat 567
||| ||| |||||| ||||||||||||||||||||||||||||||||| | ||||| |||
Sbjct: 4026 gataagaatagcca-tttattccatatagatgacttctactatcagatatgcgtgaagat 4084
Query: 568 tatagagatttgcccgaacacaaaagatgtcaacggcgggtgttttatcttttaaaagat 627
|||||||||||||| ||||||||| ||||||||||| |||||| |||| |||| ||||
Sbjct: 4085 tatagagatttgccggaacacaaaggatgtcaacgg-tggtgttatatc-tttagaagag 4142
Query: 628 ttgcatgtcaatttttttcaagaacctgaaactttgaaatggaggac 674
||||||||||| || |||||||||| || ||| | ||||||||||||
Sbjct: 4143 ttgcatgtcaa-ttatttcaagaacatg-aacatagaaatggaggac 4187
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7337
Number of Sequences: 1807
Number of extensions: 7337
Number of successful extensions: 46
Number of sequences better than 1.0e-20: 1
length of query: 986
length of database: 10,358,551
effective HSP length: 16
effective length of query: 970
effective length of database: 10,329,639
effective search space: 10019749830
effective search space used: 10019749830
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)