BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC40ZA03FM1.SCF screened BAC_end (974 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1046 773 0.0 >3x_Contig1046 Length = 3637 Score = 773 bits (390), Expect = 0.0 Identities = 443/457 (96%), Gaps = 3/457 (0%) Strand = Plus / Plus Query: 247 gtaactagtacctgacaattacctgatttggaaatgatatgagaaaagccgttaccttaa 306 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 gtaactagtacctgacaattacctgatttggaaatgatatgagaaaagccgttaccttaa 60 Query: 307 attatatgttggttttccagcattcaataatggtccggttttctctataatgaagcaatg 366 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 attatatgttggttttccagcattcaataatggtccggttttctctataatgaagcaatg 120 Query: 367 cttgtgcttggtgcatgaaattgatattgatattaccaactccaaactttaaagtggtac 426 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 cttgtgcttggtgcatgaaattgatattgatattaccaactccaaactttaaagtggtac 180 Query: 427 ctgatttttatacgtatggtaggatgataatactacccagcggtaataatgactattaac 486 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 ctgatttttatacgtatggtaggatgataatactacccagcggtaataatgactattaac 240 Query: 487 atatgcagaaatgatcaggaaactagcatgatatttgttgttcagtaaacgatgctgtga 546 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 atatgcagaaatgatcaggaaactagcatgatatttgttgttcagtaaacgatgctgtga 300 Query: 547 catctgntacctatcaagcgagtaagttgcatat-aaaaggcttcatgatgtgatacctt 605 |||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 301 catctgtaacctatcaagcgagtaagttgcatataaaaaggcttcatgatgtgatacctt 360 Query: 606 tcagaccctgtgctatgtatgtttcatgtcacattactttattatttgaagctttttggt 665 |||| |||||| |||||||||||||||||| ||||||||||||||||||||||| | Sbjct: 361 caggacctggtgctaggtatgtttcatgtcacataactttattatttgaagctttttgtt 420 Query: 666 ttagtattc-tgtcctctccccattc-acagatacca 700 ||||||||| ||||||||||||| || |||||||||| Sbjct: 421 ttagtattcttgtcctctccccaatcaacagatacca 457 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7207 Number of Sequences: 1807 Number of extensions: 7207 Number of successful extensions: 47 Number of sequences better than 1.0e-20: 1 length of query: 974 length of database: 10,358,551 effective HSP length: 16 effective length of query: 958 effective length of database: 10,329,639 effective search space: 9895794162 effective search space used: 9895794162 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 51 (101.6 bits)