BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC40ZA03RM1.SCF screened BAC_end
(954 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1502 1189 0.0
>3x_Contig1502
Length = 14970
Score = 1189 bits (600), Expect = 0.0
Identities = 805/859 (93%), Gaps = 11/859 (1%)
Strand = Plus / Plus
Query: 39 cacaacctttggtgtgaagaaactaattcctgttgctgtttctaaccttgatgatatatc 98
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9478 cacaagctttggtgtgaagaaactaattcctgttgctgtttctaaccttgatgatatatc 9537
Query: 99 ctggagaacaaaaagaggttctgtggagcttttgggtaacatggcttatttggatcccac 158
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9538 ctggagaacaaaaagaggttctgtggagcttttgggtaacatggcttatttggatcccac 9597
Query: 159 tcaactctctgcatctttgtctaccattgttcctgaaattgtaggtgttttgaatgatac 218
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9598 tcaactctctgcatctttgtctaccattgttcctgaaattgtaggtgttttgaatgatac 9657
Query: 219 tttctttgaagtcagaaaggccgctgacgagtctttgaatagatttggtgaagttattag 278
| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9658 ccacaaggaagtcagaaaggccgctgacgagtctttgaatagatttggtgaagttattag 9717
Query: 279 aaaccctgaaatccagaaattggttcctactttgattaatgctattggtgatccaacaaa 338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9718 aaaccctgaaatccagaaattggttcctactttgattaatgctattggtgatccaacaaa 9777
Query: 339 atacacagaagatgcactagatgccttgattcaaacacagtttgttcattacatcgatgg 398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9778 atacacagaagatgcactagatgccttgattcaaacacagtttgttcattacatcgatgg 9837
Query: 399 tccttcattagcgttgattatccacgttattcatcgaggtatgcgtgacagatctgcaaa 458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9838 tccttcattagcgttgattatccacgttattcatcgaggtatgcgtgacagatctgcaaa 9897
Query: 459 cactaagaggaaggcttgtaaaattgtcggtaacatggctatccttgttgatactagaga 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9898 cactaagaggaaggcttgtaaaattgtcggtaacatggctatccttgttgatactagaga 9957
Query: 519 tttggttccttacttacaacaactaattgatgaagtagaaattgctatggtagaccctgt 578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9958 tttggttccttacttacaacaactaattgatgaagtagaaattgctatggtagaccctgt 10017
Query: 579 gcctantatcagatcc-cagccgcacgtgcattatgtgccttagtcgaaagatta-gtga 636
||||| || ||| || ||||||||||||||||| |||||||||||||||||||| ||||
Sbjct: 10018 gcctaatacaagagccacagccgcacgtgcattaggtgccttagtcgaaagattaggtga 10077
Query: 637 ag-acagtt-ccagacttgatttcctcg-ttgatgtccacttt-agcgattat-cttaat 691
|| |||||| |||||||||| ||||||| |||||||||||||| |||||| || || |||
Sbjct: 10078 agaacagttcccagacttga-ttcctcgtttgatgtccactttaagcgataatactaaat 10136
Query: 692 caggggatccgatgggctca-caccagcattggcagaagtattctctggatttagtcttt 750
||||||||| ||||||||| ||| ||||||||||||||| |||||||||| ||||||
Sbjct: 10137 caggggatcgtatgggctcagcacaagcattggcagaagttatctctggattaggtcttt 10196
Query: 751 tc-agtttgaagaattgttaccaactatcctttcaggggtcacaattattcggccttatg 809
| |||| ||||| ||||||||||||||||| ||||| ||||||| | ||| ||||||
Sbjct: 10197 ccaagttggaagagttgttaccaactatcctctcaggtgtcacaaattatcgtgcttatg 10256
Query: 810 ttcg-ggaggtttcatgccccttaagcttttcttacccgttggcttggggcaacattttg 868
|||| | |||| ||||||| || | |||||||||||| ||| |||| || ||||| ||||
Sbjct: 10257 ttcgtgaaggtgtcatgcctctaatgcttttcttacctgtttgcttcggtcaacaatttg 10316
Query: 869 ctccgtactttaacaaaat 887
|||||||| | ||||||||
Sbjct: 10317 ctccgtacataaacaaaat 10335
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7157
Number of Sequences: 1807
Number of extensions: 7157
Number of successful extensions: 60
Number of sequences better than 1.0e-20: 1
length of query: 954
length of database: 10,358,551
effective HSP length: 16
effective length of query: 938
effective length of database: 10,329,639
effective search space: 9689201382
effective search space used: 9689201382
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)