BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC40ZA04RM1.SCF screened BAC_end
(921 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1640 1511 0.0
>3x_Contig1640
Length = 15521
Score = 1511 bits (762), Expect = 0.0
Identities = 823/838 (98%), Gaps = 4/838 (0%)
Strand = Plus / Plus
Query: 47 aacgttgagttgaatctagagaaagtagagagtattatggatactgctgcagaacagata 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5321 aacgttgagttgaatctagagaaagtagagagtattatggatactgctgcagaacagata 5380
Query: 107 gaaattcaaagagagatagacgatgctttatcaaacgcggttgtcggatctacgataaat 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5381 gaaattcaaagagagatagacgatgctttatcaaacgcggttgtcggatctacgataaat 5440
Query: 167 gatgaagttgatagagaattggaacagttagaccgtgaggttaacggtaccaatgagact 226
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 5441 gatgaagttgatagagaattggaacagttagaccgtgaggttaacggtaccaaggagact 5500
Query: 227 gcacctggtgtgcaagatagactggatcaactcccatcaacaaaggaattgggagaactc 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5501 gcacctggtgtgcaagatagactggatcaactcccatcaacaaaggaattgggagaactc 5560
Query: 287 aaggcttcggaaccagaaaaggaaaatggagagtcccaaaaggaaactccaaaagaagaa 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5561 aaggcttcggaaccagaaaaggaaaatggagagtcccaaaaggaaactccaaaagaagaa 5620
Query: 347 ccactattagcatgaattagaaaggaaatagtatggaaaatagaatgctctaagttcgtc 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5621 ccactattagcatgaattagaaaggaaatagtatggaaaatagaatgctctaagttcgtc 5680
Query: 407 tttgtgaatacaacagtattttgcgtcttgcatttctagctggttgttgaagtttctgta 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5681 tttgtgaatacaacagtattttgcgtcttgcatttctagctggttgttgaagtttctgta 5740
Query: 467 ttatttcattcattcaattaattaataatatatacaaaccattttacatttagatttaca 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5741 ttatttcattcattcaattaattaataatatatacaaaccattttacatttagatttaca 5800
Query: 527 ggaatgggaaattatactttggcatgtaccctttaattaggcagtgcgtattatgatttc 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5801 ggaatgggaaattatactttggcatgtaccctttaattaggcagtgcgtattatgatttc 5860
Query: 587 gcaataggaaagagggctatgaggaaagaagaaaataacaaaagattgtgtcctagaaca 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5861 gcaataggaaagagggctatgaggaaagaagaaaataacaaaagattgtgtcctagaaca 5920
Query: 647 tgccatggtcattagaatatgaataaaggtatggagttatgattcgtagatgagtgagtg 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5921 tgccatggtcattagaatatgaataaaggtatggagttatgattcgtagatgagtgagtg 5980
Query: 707 gcttcttttttcaattttcgtcaagccattccaaaaattctggagtgaaagtactgatga 766
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 5981 gcttcttttttcaattttcgtcaagccattccaaaaattctggagtgaagtaactgatga 6040
Query: 767 ttaagcgagcaccagctctgatgatcccatattgcgattcaaa-gcaatacttttcaaat 825
||||||||||||||||||||| || |||||| ||||||||||| ||||||||||||||||
Sbjct: 6041 ttaagcgagcaccagctctgaggaacccatagtgcgattcaaaggcaatacttttcaaat 6100
Query: 826 caac-acaccctt-tttgcagcagcatgttacatatcgt-tttaccactgacatggta 880
|||| |||||||| | ||||||||||||| ||||| ||| || |||||||||||||||
Sbjct: 6101 caacaacacccttctctgcagcagcatgtaacatagcgtattcaccactgacatggta 6158
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8090
Number of Sequences: 1807
Number of extensions: 8090
Number of successful extensions: 65
Number of sequences better than 1.0e-20: 1
length of query: 921
length of database: 10,358,551
effective HSP length: 16
effective length of query: 905
effective length of database: 10,329,639
effective search space: 9348323295
effective search space used: 9348323295
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)