BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC40ZA05FM1.SCF screened BAC_end
(928 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1704 1138 0.0
>3x_Contig1704
Length = 14855
Score = 1138 bits (574), Expect = 0.0
Identities = 680/710 (95%), Gaps = 4/710 (0%)
Strand = Plus / Minus
Query: 87 ctaactctcgaatttcatgagcttttagggccttgatgtcagcattttgaatgaagcgat 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8494 ctaactctcgaatttcatgagcttttagggccttgatgtcagcattttgaatgaagcgat 8435
Query: 147 ctgtcatttgtaaattattgattgcagtggaacgatcaaaagaataggcaagtgacttac 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8434 ctgtcatttgtaaattattgattgcagtggaacgatcaaaagaataggcaagtgacttac 8375
Query: 207 ccctaggagtattatatgatgggcggggtgagtcattcacgctttttaaagtctgtacac 266
||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8374 ccctaggagtaagagatgatgggcggggtgagtcattcacgctttttaaagtctgtacac 8315
Query: 267 tagttagtgatagtgatttatgcctcccatcaactgaaatactatcacagtcatagcatg 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8314 tagttagtgatagtgatttatgcctcccatcaactgaaatactatcacagtcatagcatg 8255
Query: 327 catgaatagccatcactgattcgcccatgcttctgaagaaggtatcagtggccatttgct 386
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8254 caggaatagccatcactgattcgcccatgcttctgaagaaggtatcagtggccatttgct 8195
Query: 387 tctggaccttgttgtacaggatttttgcattgttcatacataccattgcttcaaaatctt 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8194 tctggaccttgttgtacaggatttttgcattgttcatacataccattgcttcaaaatctt 8135
Query: 447 ttcgtgttgtttcagttgaagttttttgacagcttctcaataaccaatactcgacaatgt 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8134 ttcgtgttgtttcagttgaagttttttgacagcttctcaataaccaatactcgacaatgt 8075
Query: 507 ctgaaataaacacgtcatctccaaagaacaacctcatagaattattcagtttctcggatt 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8074 ctgaaataaacacgtcatctccaaagaacaacctcatagaattattcagtttctcggatt 8015
Query: 567 cctttgttaaatacaagaatgtggccaaagcctctattgttgcactttcatcaattttgg 626
|||| | ||||||||||||||||||||||||||||| |||||||| |||||| | |||
Sbjct: 8014 ccttgttaaaatacaagaatgtggccaaagcctctatgtttgcacttccatcaa-tctgg 7956
Query: 627 tcgaaagcagcattcatttttgttagtgataaagaggcattttctgattcctttatcagc 686
||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 7955 tcgaaggcagcattcatttttgttagtgataaagaggcattttctgattcctctatcagc 7896
Query: 687 tgggaattaggacattaggc-ggaaaacatgttgaaaagagctggtgggtttttccaacg 745
||| || ||||| ||||| ||||||||||||||||||||||| |||| || |||||||
Sbjct: 7895 tggtaa-taggaacataggcaggaaaacatgttgaaaagagctgttggg-ttatccaacg 7838
Query: 746 accctttaacctcttgattttcggtttttaaaaatggccagcctttgaaa 795
||||| |||||||||||| ||||||| | ||||||| ||| ||||||||
Sbjct: 7837 accctataacctcttgatattcggttatgaaaaatgcacagtctttgaaa 7788
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,331
Number of Sequences: 1807
Number of extensions: 13331
Number of successful extensions: 94
Number of sequences better than 1.0e-20: 1
length of query: 928
length of database: 10,358,551
effective HSP length: 16
effective length of query: 912
effective length of database: 10,329,639
effective search space: 9420630768
effective search space used: 9420630768
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)