BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC40ZA05RM1.SCF screened BAC_end
(929 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1556 1493 0.0
>3x_Contig1556
Length = 10874
Score = 1493 bits (753), Expect = 0.0
Identities = 834/855 (97%), Gaps = 5/855 (0%)
Strand = Plus / Plus
Query: 49 ctactgaaaatgttcaagatactggtaacaatgagacggaagtttcagaagctgttgctg 108
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 7498 ctactgaaaatgttcaagaaactggtaacaatgagacggaagtttcagaagctgttgctg 7557
Query: 109 gtgcggctgatgccaatgccggtgccaatgccgatgccaatccgatagtgacggttgatc 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7558 gtgcggctgatgccaatgccggtgccaatgccgatgccaatccgatagtgacggttgatc 7617
Query: 169 cagttaattctgaaagttctgacgttgggaacgttaccactgtgataacatgataaacct 228
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 7618 cagttaattctgaaagttctgacgttgggaacgttaccactgtgataaca-gaaaaacct 7676
Query: 229 gtttccgagaccattgcattcattggattcattcctcgtaatacgactgataatcagcta 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7677 gtttccgagaccattgcattcattggattcattcctcgtaatacgactgataatcagcta 7736
Query: 289 cgtgaatatttcaaaggatttgatccacaagaaattgttgtatttaaaaatagaacttat 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7737 cgtgaatatttcaaaggatttgatccacaagaaattgttgtatttaaaaatagaacttat 7796
Query: 349 agacgtgggttcactttccatcgccatttcacagcagccttggtaacgttccccgatgcc 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7797 agacgtgggttcactttccatcgccatttcacagcagccttggtaacgttccccgatgcc 7856
Query: 409 ttcaggctaaacgatgcgaaacagtttgcaacacaagagaaatttaggggcaaacagata 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7857 ttcaggctaaacgatgcgaaacagtttgcaacacaagagaaatttaggggcaaacagata 7916
Query: 469 aacgtgaagaacgcatttatagaaaagattgaagaagtgcaaagggctttagagaagaag 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7917 aacgtgaagaacgcatttatagaaaagattgaagaagtgcaaagggctttagagaagaag 7976
Query: 529 gcgggtgctaacactaatggagagtccgcggaaggcaacaacgaaatcccagcagatgct 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7977 gcgggtgctaacactaatggagagtccgcggaaggcaacaacgaaatcccagcagatgct 8036
Query: 589 ggggtaacaggagatgaacctgatacagctaatgctgttgcggcaattcctatcgaggga 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8037 ggggtaacaggagatgaacctgatacagctaatgctgttgcggcaattcctatcgaggga 8096
Query: 649 aatcctcaaccac-agctgacggtaatgacggtgctgtggtgtagcccga-gccaatgcc 706
||||||||||||| |||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct: 8097 aatcctcaaccacaagctgacggtaatgacggtgctgtggtggagcccgaggccaatgcc 8156
Query: 707 ngaccgcttatcgaccaggaagatggtgtgacagcatcgcaagacaatccattactt-at 765
||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct: 8157 gaaccgcttatcgaccaggaagatggtgtgacagcatcgcaggacaatccattacttaat 8216
Query: 766 ttaaatgcagagtcttcattaggatctcancaacctgtaggacaggtcgcagcctaatac 825
| ||||||||||||| ||||| |||||| |||||||||| |||||||||||||||||||
Sbjct: 8217 tcaaatgcagagtctcaattagaatctcaacaacctgtagaacaggtcgcagcctaatac 8276
Query: 826 acctactactagccttactacttctatcaattatttaaccatgggtttcataaacaacat 885
|| |||||||||| |||||||||||||||||||| |||| || |||||||||||||||||
Sbjct: 8277 acatactactagcattactacttctatcaattatataactat-ggtttcataaacaacat 8335
Query: 886 gcttttctacgtaaa 900
|||||||||||||||
Sbjct: 8336 gcttttctacgtaaa 8350
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5460
Number of Sequences: 1807
Number of extensions: 5460
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 929
length of database: 10,358,551
effective HSP length: 16
effective length of query: 913
effective length of database: 10,329,639
effective search space: 9430960407
effective search space used: 9430960407
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)