BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC40ZA06RM1.SCF screened BAC_end
(997 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1541 1241 0.0
>3x_Contig1541
Length = 10565
Score = 1241 bits (626), Expect = 0.0
Identities = 712/731 (97%), Gaps = 10/731 (1%)
Strand = Plus / Minus
Query: 46 ctttcaaatacatagtcccttgcatccttaaacctcttacccttgtaaagatcgttccct 105
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4473 ctttcaaatacatag-cccttgcatccttaaacctcttacccttgtaaagatcgttccct 4415
Query: 106 tgattcttgaaattagttgcaatttcatggggctcaccttcataggccatggcttttaag 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4414 tgattcttgaaattagttgcaatttcatggggctcaccttcataggccatggcttttaag 4355
Query: 166 gcttccaactctacattgctttcatctgggtcaagtttgttcataaaaaatggcatctta 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4354 gcttccaactctacattgctttcatctgggtcaagtttgttcataaaaaatggcatctta 4295
Query: 226 tttaactcctccaatacctcatcagtggttttattttggaactcagatagttgtggtggt 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4294 tttaactcctccaatacctcatcagtggttttattttggaactcagatagttgtggtggt 4235
Query: 286 aaaagtgggtcatttggacctggaacatacctctttggtttttccattgtgagcaggcct 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4234 aaaagtgggtcatttggacctggaacatacctctttggtttttccattgtgagcaggcct 4175
Query: 346 tagtagatatcctccttttaaacccttcagataatacagataatgttaaatttctgacga 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4174 tagtagatatcctccttttaaacccttcagataatacagataatgttaaatttctgacga 4115
Query: 406 tgtgaatcatgcaggaatttgactataccaagtgcgttatcagaagctgtggagacagag 465
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4114 tgtgaatcaggcaggaatttgactataccaagtgcgttatcagaagctgtggagacagag 4055
Query: 466 taactggcttttttgaacagtcactttccgctcgatgagatgagatgagatttttttcct 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4054 taactggcttttttgaacagtcactttccgctcgatgagatgagatgagatttttttcct 3995
Query: 526 agaacttgtaaaattctgtgtcaaagctctcttggcgagtcgagaataagatcaacatac 585
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct: 3994 agaacttgtaaaattctgtgtcaaagctctcttggcgagtcgagaaaaagatcaacaaac 3935
Query: 586 cacgtgatttagtgaatggtggtgtccattacatcacccngttaatat-accagattata 644
||||||||||||||||||||||||||||||||| ||||| || ||||| |||||||||||
Sbjct: 3934 cacgtgatttagtgaatggtggtgtccattacaacacccggt-aatattaccagattata 3876
Query: 645 tactggggcagta-tcaaataaaatagagtgagtactaaagtttaaaaaactgtatgcgc 703
|||||| |||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 3875 tactggca-agtaatcaaataaataagagtgagtactaaagtttaaaaaactgtatgcgc 3817
Query: 704 cccaaattgtattgnttctatcagtatcgtggggaatggggggaaaggggggagaatt-a 762
|||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |
Sbjct: 3816 cccaaattgtattg-ttctatcagtatcgtggggaatggggggaa---ggggagaattaa 3761
Query: 763 tatgataagtg 773
|||||||||||
Sbjct: 3760 tatgataagtg 3750
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7234
Number of Sequences: 1807
Number of extensions: 7234
Number of successful extensions: 330
Number of sequences better than 1.0e-20: 1
length of query: 997
length of database: 10,358,551
effective HSP length: 16
effective length of query: 981
effective length of database: 10,329,639
effective search space: 10133375859
effective search space used: 10133375859
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)