BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC40ZA07FM1.SCF screened BAC_end
(943 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1075 1193 0.0
>3x_Contig1075
Length = 3835
Score = 1193 bits (602), Expect = 0.0
Identities = 657/670 (98%), Gaps = 4/670 (0%)
Strand = Plus / Plus
Query: 87 tacaagaaggcaacctcgatcaaccaaaagccttgaaatgagggaaactttatgcccagt 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2013 tacaagaaggcaacctcgatcaaccaaaagccttgaaatgagggaaactttatgcccagt 2072
Query: 147 caccaggaaaaaggcaactgcctcgtcaggaaagtgttatagtacttaaaattgtgtcag 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2073 caccaggaaaaaggcaactgcctcgtcaggaaagtgttatagtacttaaaattgtgtcag 2132
Query: 207 aatttttatgcagaaagaatgatctagtaatatcataaaaagttgtctgtttattttata 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2133 aatttttatgcagaaagaatgatctagtaatatcataaaaagttgtctgtttattttata 2192
Query: 267 tgttgaggatgaatgcacaggaagaagagtcaccaatggatacgcaacaactggcgtaca 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2193 tgttgaggatgaatgcacaggaagaagagtcaccaatggatacgcaacaactggcgtaca 2252
Query: 327 tcgcagcccttaagagagaactcacagctaaggagcaattattgagacagacgatacagg 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2253 tcgcagcccttaagagagaactcacagctaaggagcaattattgagacagacgatacagg 2312
Query: 387 catgtaacagagctgaagccaatttaaatacagacgtggtgaattacagagtttgggatc 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2313 catgtaacagagctgaagccaatttaaatacagacgtggtgaattacagagtttgggatc 2372
Query: 447 aattggcacagaggcagatgtacacttcgagtagatctgatccgattgggattgcgtcat 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2373 aattggcacagaggcagatgtacacttcgagtagatctgatccgattgggattgcgtcat 2432
Query: 507 tgaagcagagtttgcaagttgaccacaaacaatcaatatttcatgaatacagagc-attt 565
||||||||||||||||||||||| |||||||||||||||| ||||| ||||||| ||||
Sbjct: 2433 tgaagcagagtttgcaagttgacaacaaacaatcaatattcaatgaa-acagagcaattt 2491
Query: 566 ctagttgagatggtaaataaacagaaacagtttaatgcagatatgtcgtcattgattgtg 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2492 ctagttgagatggtaaataaacagaaacagtttaatgcagatatgtcgtcattgattgtg 2551
Query: 626 atgttacaagaacgtcttcgtgatgagaatcaatcacctgaaaatgcccggagattcatt 685
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |
Sbjct: 2552 atgttacaagaacgtcttcgtgatgagaatcaatcacctgaaaatg-ccggagatccaat 2610
Query: 686 tgggatgattcaagaaatgaagtctaaaattttcgatctaattc-aaatcctttggccgt 744
||| |||||||||||||||||||||||||||||||||||||||| ||||| | |||||||
Sbjct: 2611 tggaatgattcaagaaatgaagtctaaaattttcgatctaattcgaaatcatatggccgt 2670
Query: 745 aaacatttcc 754
| ||||||||
Sbjct: 2671 agacatttcc 2680
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6845
Number of Sequences: 1807
Number of extensions: 6845
Number of successful extensions: 46
Number of sequences better than 1.0e-20: 1
length of query: 943
length of database: 10,358,551
effective HSP length: 16
effective length of query: 927
effective length of database: 10,329,639
effective search space: 9575575353
effective search space used: 9575575353
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)