BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC40ZA07RM1.SCF screened BAC_end
(917 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1795 1223 0.0
>3x_Contig1795
Length = 38452
Score = 1223 bits (617), Expect = 0.0
Identities = 719/744 (96%), Gaps = 7/744 (0%)
Strand = Plus / Plus
Query: 46 tggatgatgagaagaacccatctactttgagaattatcaagagaaacccagactacgacg 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8410 tggatgatgagaagaacccatctactttgagaattatcaagagaaacccagactacgacg 8469
Query: 106 atgaagatgatgctggtggtttgttgggtgattacgacgaagatgaattagacatttccg 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8470 atgaagatgatgctggtggtttgttgggtgattacgacgaagatgaattagacatttccg 8529
Query: 166 aagaggaagaagaagaggaggaaaagtcaaagtctaagaagggtaagggtaagggtaagt 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8530 aagaggaagaagaagaggaggaaaagtcaaagtctaagaagggtaagggtaagggtaagt 8589
Query: 226 ccaagaagcaagaagaggaagaggaagaggaagaggaagatgaagatgaaggcgatgaag 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8590 ccaagaagcaagaagaggaagaggaagaggaagaggaagatgaagatgaaggcgatgaag 8649
Query: 286 aacttatcgaaattgacaccgatgacgaattccaagaattcgtcctagcgactttgtcac 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8650 aacttatcgaaattgacaccgatgacgaattccaagaattcgtcctagcgactttgtcac 8709
Query: 346 caaagactcaatatcaacaatctttggatattgntaattgctccagaagaagaagttcaa 405
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 8710 caaagactcaatatcaacaatctttggatattg-taattgctccagaagaagaagttcaa 8768
Query: 406 ttcattgttactggttcttaccgtgtttctctaaccggtaactatgtcaagcacccattc 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8769 ttcattgttactggttcttaccgtgtttctctaaccggtaactatgtcaagcacccattc 8828
Query: 466 gatgcaccaggttacgatgacgaagatgacgatgaagaagacgatgaaagctacgatgaa 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8829 gatgcaccaggttacgatgacgaagatgacgatgaagaagacgatgaaagctacgatgaa 8888
Query: 526 gatgaagacgactatctaaccccggatgaagaagctgatctggaagagttagaagatgct 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8889 gatgaagacgactatctaaccccggatgaagaagctgatctggaagagttagaagatgct 8948
Query: 586 agcgacgttgaagctaagatccaagagcttgtcgaaaaagaacaaatct-agtctatgaa 644
||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |||
Sbjct: 8949 agcgacgttgaagctaagatccaagagcttgtcgaaaaagaac-aatctaagtctaagaa 9007
Query: 645 gaacatcaagagatagcatccagaacccagagatgaagatgaagatgaatgagaagagga 704
||||| ||||||| |||| |||||||| ||| ||||| ||||| ||| ||||||||
Sbjct: 9008 gaacaacaagagaaagcaaccagaaccagaagaggaagaggaagaggaagaggaagagga 9067
Query: 705 agaggaacataagctagttgaagaaact-aaaagaacaagagggct-agaaag-anagaa 761
||||||||| |||||||||||||||||| |||||||||||| |||| |||||| | ||||
Sbjct: 9068 agaggaacaaaagctagttgaagaaactaaaaagaacaagaaggctaagaaagaaaagaa 9127
Query: 762 gggtgatttcaag-aagacctaga 784
|| ||| |||||| ||||||||||
Sbjct: 9128 ggttgaattcaagaaagacctaga 9151
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,418
Number of Sequences: 1807
Number of extensions: 12418
Number of successful extensions: 546
Number of sequences better than 1.0e-20: 1
length of query: 917
length of database: 10,358,551
effective HSP length: 16
effective length of query: 901
effective length of database: 10,329,639
effective search space: 9307004739
effective search space used: 9307004739
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)