BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC40ZA08FM1.SCF screened BAC_end
(930 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1592 1340 0.0
>3x_Contig1592
Length = 12307
Score = 1340 bits (676), Expect = 0.0
Identities = 725/740 (97%), Gaps = 1/740 (0%)
Strand = Plus / Plus
Query: 83 tggtccaaactgtgacaagggcaatagacgaagatgaagaagatgaagatgatgatgatc 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1352 tggtccaaactgtgacaagggcaatagacgaagatgaagaagatgaagatgatgatgatc 1411
Query: 143 atcatcatgacgtcgaatccgctgacgatatgaaaagcaaagatatctcgattccaccta 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1412 atcatcatgacgtcgaatccgctgacgatatgaaaagcaaagatatctcgattccaccta 1471
Query: 203 gcatttctatatctgacaatttcggcacatttaggttagtgttacagtcaattcttataa 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1472 gcatttctatatctgacaatttcggcacatttaggttagtgttacagtcaattcttataa 1531
Query: 263 ccaacaaggaaacagaacaaatctttactggcataagacaaagcgaaaacgatagaagta 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1532 ccaacaaggaaacagaacaaatctttactggcataagacaaagcgaaaacgatagaagta 1591
Query: 323 atgctgacataaatgatgattggctcttatacgatacggattttaatttaggcaatttac 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1592 atgctgacataaatgatgattggctcttatacgatacggattttaatttaggcaatttac 1651
Query: 383 aaatgttgtcgttatacgatattttggacttcagtaaatttttacccaaaattctgtttt 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1652 aaatgttgtcgttatacgatattttggacttcagtaaatttttacccaaaattctgtttt 1711
Query: 443 actctatgatccacgttaaggattctgtcgacgataacacggagctatctttacaacatc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1712 actctatgatccacgttaaggattctgtcgacgataacacggagctatctttacaacatc 1771
Query: 503 tgattacagtcaataatactctgactaatggaaatatgtatagtccacatgaagttgatg 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1772 tgattacagtcaataatactctgactaatggaaatatgtatagtccacatgaagttgatg 1831
Query: 563 attcaatgagtgaattaagttctgataactcgattgaatgttacacaggatattcaaatg 622
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 1832 attcaatgagtgaattaagttctgataactcgattgaatgttacacaggaaattcaaatg 1891
Query: 623 actccattgcggatgaaccagtcatcggactgtactcgccagcaactgcggctacagcag 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1892 actccattgcggatgaaccagtcatcggactgtactcgccagcaactgcggctacagcag 1951
Query: 683 gtcataggtccatcagaacgggtggaagtattggtgcgtgggcccttaattaggtccaat 742
||||||||||||||||||||| | ||||||||||||||||| |||||| ||||||||||
Sbjct: 1952 gtcataggtccatcagaacggtggaaagtattggtgcgtggg-ccttaaataggtccaat 2010
Query: 743 acccaaaaaagttggggaactgtgcaaaacacggtttcaagggacttcgaagggattttc 802
||| |||||||| || |||||||||||||||||| |||||||||| | ||||| ||||
Sbjct: 2011 accaaaaaaagtatggaaactgtgcaaaacacggtatcaagggactccagagggaatttc 2070
Query: 803 atgaacagaatcaagtctca 822
||||||||||||||||||||
Sbjct: 2071 atgaacagaatcaagtctca 2090
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7289
Number of Sequences: 1807
Number of extensions: 7289
Number of successful extensions: 232
Number of sequences better than 1.0e-20: 1
length of query: 930
length of database: 10,358,551
effective HSP length: 16
effective length of query: 914
effective length of database: 10,329,639
effective search space: 9441290046
effective search space used: 9441290046
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)