BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC40ZA08RM1.SCF screened BAC_end
(939 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1515 1245 0.0
>3x_Contig1515
Length = 8855
Score = 1245 bits (628), Expect = 0.0
Identities = 762/789 (96%), Gaps = 14/789 (1%)
Strand = Plus / Plus
Query: 138 tgttgaaatcccaaattaaagacgaatcaatcaacctaattaagaaatcgttaaattaca 197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgttgaaatcccaaattaaagacgaatcaatcaacctaattaagaaatcgttaaattaca 60
Query: 198 accttgagaaaacattcagcgttataggtgaaaaatactacgatgtatatgagactcaga 257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 accttgagaaaacattcagcgttataggtgaaaaatactacgatgtatatgagactcaga 120
Query: 258 ttttacaagactggctaaagaccaaacaatccatgaaattacacaactataaatttaatt 317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ttttacaagactggctaaagaccaaacaatccatgaaattacacaactataaatttaatt 180
Query: 318 ctcctgtcgaaatatcattgcgtgacacttcaaaacttgattctttacaattacaaaaac 377
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 181 ctcctgtcgaaatatcattgcgtgacacttcaaaacttgattctttacaattacaaaa-c 239
Query: 378 ttctgtcagcttcatgaatttcatgactcaatattgatttttcaatctttgaatgaaatg 437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 ttctgtcagcttcatgaatttcatgactcaatattgatttttcaatctttgaatgaaatg 299
Query: 438 gatttctttatcgatgaatttcgtaaagaatacgagttcaggaagtcaaaactaattcac 497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 gatttctttatcgatgaatttcgtaaagaatacgagttcaggaagtcaaaactaattcac 359
Query: 498 ccgttatttctgaaagatttttcgacggtatctcattcaaacggaaagatagacgctttt 557
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 ccgttatttctgaaagatttttcgacggtatctcattcaaacggaaagatagacgctttt 419
Query: 558 gctgagaaactagacctaagtttttttaaagagtacattcttaagattttgggtttcctt 617
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 gctgagaaactagacctaagtttttttaaagagtacattcttaagattttgggtttcctt 479
Query: 618 gtgtacgacaaagagttgcataagtcgactgactatgttctctcaaacaatanntatccc 677
|||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 480 gtgtacgacaaagagttgcataagtcgactgactatgttctctcaaacaataataaccct 539
Query: 678 tactcgactgacatattttggacgtctatcatgaatcagttgtacccatatttgattaca 737
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 540 aactcgactgacatattttggacgtctatcatgaacaagttgtacccatatttgattaca 599
Query: 738 atggtaaaagagaaattgaccaccgagcagttgttaacccgaattncaaagatttccttg 797
||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct: 600 atggtaaaagagaaattgaccaccgagcagttgttaa-ccgaatt-caaagatttccttg 657
Query: 798 gcggttcttatagcaatttctaggaaatttgaaaactaaaatgtanagttacttttacaa 857
|| ||||||||||||| |||||| ||||||| ||||| ||||||| |||||| |||||||
Sbjct: 658 gc-gttcttatagcaa-ttctagaaaatttg-aaact-aaatgtagagttac-tttacaa 712
Query: 858 agtgacaagttcgaaacatttcggtcagtactggcgacctactttggatttttaatttca 917
||| ||||| |||||||| ||| ||||||||| |||| |||| ||| |||||| ||||||
Sbjct: 713 agt-acaag-tcgaaaca-ttcagtcagtact-gcgaactac-ttgtattttt-atttca 766
Query: 918 gaaagaatt 926
|||||||||
Sbjct: 767 gaaagaatt 775
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8195
Number of Sequences: 1807
Number of extensions: 8195
Number of successful extensions: 64
Number of sequences better than 1.0e-20: 1
length of query: 939
length of database: 10,358,551
effective HSP length: 16
effective length of query: 923
effective length of database: 10,329,639
effective search space: 9534256797
effective search space used: 9534256797
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)